Evidence map›Paper›PMID 30309207›Full record

ArticleGenomics & informatics2018

GNI Corpus Version 1.0: Annotated Full-Text Corpus of Genomics & Informatics to Support Biomedical Information Extraction.

So-Yeon Oh, Ji-Hyeon Kim, Seo-Jin Kim, Hee-Jo Nam, Hyun-Seok Park

Abstract read
In one paragraph

Article in Genomics & informatics, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

So-Yeon OhBioinformatics Laboratory, ELTEC College of Engineering, Ewha Womans University, Seoul 03760, Korea.
Ji-Hyeon KimBioinformatics Laboratory, ELTEC College of Engineering, Ewha Womans University, Seoul 03760, Korea.
Seo-Jin KimBioinformatics Laboratory, ELTEC College of Engineering, Ewha Womans University, Seoul 03760, Korea.
Hee-Jo NamBioinformatics Laboratory, ELTEC College of Engineering, Ewha Womans University, Seoul 03760, Korea.
Hyun-Seok ParkBioinformatics Laboratory, ELTEC College of Engineering, Ewha Womans University, Seoul 03760, Korea.

Funding

Ewha Womans University 1-2018-0698-001-1
6 · The paper itself

Abstract

Genomics & Informatics (NLM title abbreviation: Genomics Inform) is the official journal of the Korea Genome Organization. Text corpus for this journal annotated with various levels of linguistic information would be a valuable resource as the process of information extraction requires syntactic, semantic, and higher levels of natural language processing. In this study, we publish our new corpus called GNI Corpus version 1.0, extracted and annotated from full texts of Genomics & Informatics, with NLTK (Natural Language ToolKit)-based text mining script. The preliminary version of the corpus could be used as a training and testing set of a system that serves a variety of functions for future biomedical text mining.

Indexed as

biomedical text miningcorpus linguisticstext analytics

Identifiers

PMID30309207
PMCPMC6187819

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.