Evidence map›Paper›PMID 30309206›Full record

ArticleGenomics & informatics2018

Generation of Whole-Genome Sequencing Data for Comparing Primary and Castration-Resistant Prostate Cancer.

Jong-Lyul Park, Seon-Kyu Kim, Jeong-Hwan Kim, Seok Joong Yun, Wun-Jae Kim, Won Tae Kim, Pildu Jeong, Ho Won Kang, Seon-Young Kim

Abstract read
In one paragraph

Article in Genomics & informatics, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Jong-Lyul ParkGenome Editing Research Center, Korea Research Institute of Bioscience and Biotechnology, Daejeon 34141, Korea.
Seon-Kyu KimPersonalized Genomic Medicine Research Center, Korea Research Institute of Bioscience and Biotechnology, Daejeon 34141, Korea.
Jeong-Hwan KimGenome Editing Research Center, Korea Research Institute of Bioscience and Biotechnology, Daejeon 34141, Korea.
Seok Joong YunDepartment of Urology, Chungbuk National University College of Medicine, Cheongju 28644, Korea.
Wun-Jae KimDepartment of Urology, Chungbuk National University College of Medicine, Cheongju 28644, Korea.
Won Tae KimDepartment of Urology, Chungbuk National University College of Medicine, Cheongju 28644, Korea.
Pildu JeongDepartment of Urology, Chungbuk National University College of Medicine, Cheongju 28644, Korea.
Ho Won KangDepartment of Urology, Chungbuk National University Hospital, Cheongju 28644, Korea.
Seon-Young KimGenome Editing Research Center, Korea Research Institute of Bioscience and Biotechnology, Daejeon 34141, Korea.

Funding

Korea Research Institute of Bioscience and BiotechnologyMinistry of Education, Science and TechnologyNational Research Foundation of Korea 2014M3C9A3068 554National Research Foundation of Korea 2017MBA9B5060884
6 · The paper itself

Abstract

Because castration-resistant prostate cancer (CRPC) does not respond to androgen deprivation therapy and has a very poor prognosis, it is critical to identify a prognostic indicator for predicting high-risk patients who will develop CRPC. Here, we report a dataset of whole genomes from four pairs of primary prostate cancer (PC) and CRPC samples. The analysis of the paired PC and CRPC samples in the whole-genome data showed that the average number of somatic mutations per patients was 7,927 in CRPC tissues compared with primary PC tissues (range, 1,691 to 21,705). Our whole-genome sequencing data of primary PC and CRPC may be useful for understanding the genomic changes and molecular mechanisms that occur during the progression from PC to CRPC.

Indexed as

castration-resistant prostate cancerDNA variantswhole-genome sequencing

Identifiers

PMID30309206
PMCPMC6187813

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.