ArticleInternational journal of environmental research and public health2018
A Metagenomic Approach to Evaluating Surface Water Quality in Haiti.
Article in International journal of environmental research and public health, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.
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Who cites it
22 citing papers in PubMed.
- Automatic detection of harmful cyanobacterial genera using deep CNN models and artemisinin optimization.Scientific reports · 2025Article
- Hybridization capture sequencing formBio · 2025Article
- Characterization and ex vivo modelling of endodontic infections from the Arabian Gulf region.International endodontic journal · 2025Article
- Detection of parasites in food and water matrices by shotgun metagenomics: A narrative review.Food and waterborne parasitology · 2025Review
- Microbial Ecotoxicology-40 Years on.Life (Basel, Switzerland) · 2025Article
- A metagenomic analysis coupled with oligotrophic enrichment approach for detecting specified microorganisms in potable groundwater samples.Frontiers in microbiology · 2025Article
- Assessing the Relative Sustainability of Point-of-Use Water Disinfection Technologies for Off-Grid Communities.ACS environmental Au · 2024Article
- A Comparative Metagenomic Analysis of Specified Microorganisms in Groundwater for Non-Sterilized Pharmaceutical Products.Current microbiology · 2024Article
- Environmental Reservoirs of Pathogenic Vibrio spp. and Their Role in Disease: The List Keeps Expanding.Advances in experimental medicine and biology · 2023Review
- Review of Rapid Diagnostic Methods forThe East African health research journal · 2023Article
- Metagenomic Analysis of Microbial Contamination in the U.S. Portion of the Tijuana River Watershed.International journal of environmental research and public health · 2022Article
- Mobile resistome of microbial communities and antimicrobial residues from drinking water supply systems in Rio de Janeiro, Brazil.Scientific reports · 2022Article
- Article
- A potential microbiological approach to the evaluation of earthquake-induced soil liquefaction.iScience · 2021Article
- Antibiotic-ResistantAntibiotics (Basel, Switzerland) · 2021Review
- Aging-Induced Dysbiosis of Gut Microbiota as a Risk Factor for IncreasedFrontiers in immunology · 2021Article
- Metagenomics as a Tool To Monitor Reclaimed-Water Quality.Applied and environmental microbiology · 2020Review
- Article
- Microbial resolution of whole genome shotgun and 16S amplicon metagenomic sequencing using publicly available NEON data.PloS one · 2020Article
- Metagenomic analysis of drinking water samples collected from treatment plants of Hyderabad City and Mehran University Employees Cooperative Housing Society.Environmental science and pollution research international · 2019Article
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7 authors.
Funding
Abstract
The cholera epidemic that occurred in Haiti post-earthquake in 2010 has resulted in over 9000 deaths during the past eight years. Currently, morbidity and mortality rates for cholera have declined, but cholera cases still occur on a daily basis. One continuing issue is an inability to accurately predict and identify when cholera outbreaks might occur. To explore this surveillance gap, a metagenomic approach employing environmental samples was taken. In this study, surface water samples were collected at two time points from several sites near the original epicenter of the cholera outbreak in the Central Plateau of Haiti. These samples underwent whole genome sequencing and subsequent metagenomic analysis to characterize the microbial community of bacteria, fungi, protists, and viruses, and to identify antibiotic resistance and virulence associated genes. Replicates from sites were analyzed by principle components analysis, and distinct genomic profiles were obtained for each site. Cholera toxin converting phage was detected at one site, and Shiga toxin converting phages at several sites. Members of the
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