ArticlePloS one2018
Characterization of genetic diversity in Turkish common bean gene pool using phenotypic and whole-genome DArTseq-generated silicoDArT marker information.
Article in PloS one, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.
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Who cites it
25 citing papers in PubMed, 77 citations in OpenAlex.
- GBS-derived SNP and SilicoDArT markers reveals the genetic variation and population structure of Korean buckwheat (Fagopyrum esculentum) an underutilised crop.BMC plant biology · 2025Article
- DArTseq Analysis of Cypriot Common Bean Germplasm Unveils an Assortment of Unexplored Genetic Variability.Plants (Basel, Switzerland) · 2025Article
- Genome-wide association study of common bean (Phaseolus vulgaris L.) unveils novel loci governing root-to-seed zinc allocation.Scientific reports · 2025Article
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- Identification of Phenotypic Diversity and DArTseq Loci Associated with Vitamin A Contents in Turkish Common Bean Germplasm Through GWAS.Plants (Basel, Switzerland) · 2025Article
- Genome-wide association study of cassava brown streak disease resistance in cassava germplasm conserved in South America.Scientific reports · 2024Article
- Sampling strategies for genotyping common bean (Frontiers in plant science · 2024Article
- Legumes and common beans in sustainable diets: nutritional quality, environmental benefits, spread and use in food preparations.Frontiers in nutrition · 2024Review
- Use of retrotransposon based iPBS markers for determination of genetic relationship among some Chestnut Cultivars (Castanea sativa Mill.) in Türkiye.Molecular biology reports · 2023Article
- Optimized Recovery of Cryostored Dormant Buds of Mulberry Germplasm.Plants (Basel, Switzerland) · 2023Article
- Genome-Wide association analysis of phenotypic traits in Bambara groundnut under drought-stressed and non-stressed conditions based on DArTseq SNP.Frontiers in plant science · 2023Article
- Identifying genetically redundant accessions in the world's largest cassava collection.Frontiers in plant science · 2023Article
- Analysis of genetic diversity among common bean germplasm by start codon targeted (SCoT) markers.Molecular biology reports · 2022Article
- Magnesium- a Forgotten Element: Phenotypic Variation and Genome Wide Association Study in Turkish Common Bean Germplasm.Frontiers in genetics · 2022Article
- Article
- Genetic dissection of days to flowering via genome-wide association studies in Turkish common bean germplasm.Physiology and molecular biology of plants : an international journal of functional plant biology · 2021Article
- Genome-Wide Identification and Development of LTR Retrotransposon-Based Molecular Markers for thePlants (Basel, Switzerland) · 2021Article
- Article
- Genetic Diversity, Population Structure and Marker-Trait Association for 100-Seed Weight in International Safflower Panel Using SilicoDArT Marker Information.Plants (Basel, Switzerland) · 2020Article
- Genome-wide association study identifies various loci underlying agronomic and morphological traits in diversified potato panel.Physiology and molecular biology of plants : an international journal of functional plant biology · 2020Article
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Authors and funding
13 authors at 7 institutions in 4 countries.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Turkey presents a great diversity of common bean landraces in farmers' fields. We collected 183 common bean accessions from 19 different Turkish geographic regions and 5 scarlet runner bean accessions to investigate their genetic diversity and population structure using phenotypic information (growth habit, and seed weight, flower color, bracteole shape and size, pod shape and leaf shape and color), geographic provenance and 12,557 silicoDArT markers. A total of 24.14% markers were found novel. For the entire population (188 accessions), the expected heterozygosity was 0.078 and overall gene diversity, Fst and Fis were 0.14, 0.55 and 1, respectively. Using marker information, model-based structure, principal coordinate analysis (PCoA) and unweighted pair-group method with arithmetic means (UPGMA) algorithms clustered the 188 accessions into two main populations A (predominant) and B, and 5 unclassified genotypes, representing 3 meaningful heterotic groups for breeding purposes. Phenotypic information clearly distinguished these populations; population A and B, respectively, were bigger (>40g/100 seeds) and smaller (<40g/100 seeds) seed-sized. The unclassified population was pure and only contained climbing genotypes with 100 seed weight 2-3 times greater than populations A and B. Clustering was mainly based on A: seed weight, B: growth habit, C: geographical provinces and D: flower color. Mean kinship was generally low, but population B was more diverse than population A. Overall, a useful level of gene and genotypic diversity was observed in this work and can be used by the scientific community in breeding efforts to develop superior common bean strains.
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