Evidence map›Paper›PMID 30307368›Full record

ArticlemAbs2019

High-resolution glycosylation site-engineering method identifies MICA epitope critical for shedding inhibition activity of anti-MICA antibodies.

T Noelle Lombana, Marissa L Matsumoto, Amy M Berkley, Evangeline Toy, Ryan Cook, Yutian Gan, Changchun Du, Paul Schnier, Wendy Sandoval, Zhengmao Ye and 3 more

Open access · greenAbstract read
In one paragraph

Article in mAbs, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
0.4field-weighted citation impact, top 39% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 9 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. NKG2D-bispecific enhances NK and CD8+ T cell antitumor immunity.Cancer immunology, immunotherapy : CII · 2024
    Article
  6. Computational design of N-linked glycans for high throughput epitope profiling.Protein science : a publication of the Protein Society · 2023
    Article
  7. Article
  8. Article
  9. Article
  10. High-ThroughputFrontiers in immunology · 2020
    Article
  11. Article
  12. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 6 institutions in 4 countries.

T Noelle Lombanaa Department of Antibody Engineering , Genentech Inc ., South San Francisco , USA.
Marissa L Matsumotob Structural Biology , Genentech Inc ., South San Francisco , USA.
Amy M Berkleyc Translational Oncology , Genentech Inc ., South San Francisco , USA.
Evangeline Toyc Translational Oncology , Genentech Inc ., South San Francisco , USA.
Ryan Cookd Biochemical and Cellular Pharmacology , Genentech Inc ., South San Francisco , USA.
Yutian Gane Microchemistry, Proteomics and Lipidomics , Genentech Inc ., South San Francisco , USA.
Changchun Dud Biochemical and Cellular Pharmacology , Genentech Inc ., South San Francisco , USA.
Paul Schniere Microchemistry, Proteomics and Lipidomics , Genentech Inc ., South San Francisco , USA.ORCID 0000-0003-0898-2312
Wendy Sandovale Microchemistry, Proteomics and Lipidomics , Genentech Inc ., South San Francisco , USA.
Zhengmao Yed Biochemical and Cellular Pharmacology , Genentech Inc ., South San Francisco , USA.
Jill M Schartnerc Translational Oncology , Genentech Inc ., South San Francisco , USA.
Jeong Kimf Cancer Immunology , Genentech Inc ., South San Francisco , USA.
Christoph Spiessa Department of Antibody Engineering , Genentech Inc ., South San Francisco , USA.ORCID 0000-0002-0570-9700
Microsemi (Canada) · CATranslational Research in Oncology · FRBiochemical Society · GBCancer Research Institute · USJoint Center for Structural Genomics · USResearch & Diagnostic Antibodies (United States) · US

Funding

X-ray Absorption Spectroscopy (XAS) pp.711-759P41GM103393 · NIGMS · STANFORD UNIVERSITY · PI HODGSON, KEITH O · 2012 to 2019
$30.6M
Howard Hughes Medical InstituteNIGMS NIH HHS P41 GM103393
6 · The paper itself

Abstract

As an immune evasion strategy, MICA and MICB, the major histocompatibility complex class I homologs, are proteolytically cleaved from the surface of cancer cells leading to impairment of CD8 + T cell- and natural killer cell-mediated immune responses. Antibodies that inhibit MICA/B shedding from tumors have therapeutic potential, but the optimal epitopes are unknown. Therefore, we developed a high-resolution, high-throughput glycosylation-engineered epitope mapping (GEM) method, which utilizes site-specific insertion of N-linked glycans onto the antigen surface to mask local regions. We apply GEM to the discovery of epitopes important for shedding inhibition of MICA/B and validate the epitopes at the residue level by alanine scanning and X-ray crystallography (Protein Data Bank accession numbers 6DDM (1D5 Fab-MICA*008), 6DDR (13A9 Fab-MICA*008), 6DDV (6E1 Fab-MICA*008). Furthermore, we show that potent inhibition of MICA shedding can be achieved by antibodies that bind GEM epitopes adjacent to previously reported cleavage sites, and that these anti-MICA/B antibodies can prevent tumor growth in vivo.

Indexed as

AntibodiesDrug DiscoveryEpitope MappingEpitopesGlycosylationHistocompatibility Antigens Class IHumansProtein EngineeringAntibodiesEpitopesHistocompatibility Antigens Class IMHC class I-related chain Aalanine scanantibody characterizationantibody discoverybinding interfaceepitope mappingFPOP

Identifiers

PMID30307368
PMCPMC6343778
OpenAlexW2896354574

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.