Evidence map›Paper›PMID 30306255›Full record

ArticleJournal of cancer research and clinical oncology2018

Multigene panel testing beyond BRCA1/2 in breast/ovarian cancer Spanish families and clinical actionability of findings.

Sandra Bonache, Irene Esteban, Alejandro Moles-Fernández, Anna Tenés, Laura Duran-Lozano, Gemma Montalban, Vanessa Bach, Estela Carrasco, Neus Gadea, Adrià López-Fernández and 8 more

Open access · greenAbstract read
In one paragraph

Article in Journal of cancer research and clinical oncology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 46 papers, 4 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
46citing papers in PubMed, 4 pooled it
6.1field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

46 citing papers in PubMed, 4 syntheses or guidelines pooled it, 65 citations in OpenAlex.

  1. Pooled it
  2. Summary ofGenes · 2020
    Pooled it
  3. Pooled it
  4. The role of PPM1D in cancer and advances in studies of its inhibitors.Biomedicine & pharmacotherapy = Biomedecine & pharmacotherapie · 2020
    Pooled it
  5. Trial
  6. Article
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  10. Review
  11. Article
  12. Article
  13. Article
  14. Article
  15. GermlineJournal of personalized medicine · 2024
    Article
  16. The breast journal · 2024
    Article
  17. Article
  18. Advances in laboratory medicine · 2023
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 7 institutions in 2 countries.

Sandra Bonache *Oncogenetics Group, Vall d'Hebron Institute of Oncology-VHIO, Lab 2.02A, CELLEX CENTER, c/Natzaret, 115-117, 08035, Barcelona, Catalonia, Spain.
Irene Esteban *High Risk and Cancer Prevention Group, VHIO, Barcelona, Spain.
Alejandro Moles-FernándezOncogenetics Group, Vall d'Hebron Institute of Oncology-VHIO, Lab 2.02A, CELLEX CENTER, c/Natzaret, 115-117, 08035, Barcelona, Catalonia, Spain.
Anna TenésArea of Clinical and Molecular Genetics, University Hospital of Vall d'Hebron, Barcelona, Spain.
Laura Duran-LozanoOncogenetics Group, Vall d'Hebron Institute of Oncology-VHIO, Lab 2.02A, CELLEX CENTER, c/Natzaret, 115-117, 08035, Barcelona, Catalonia, Spain.
Gemma MontalbanOncogenetics Group, Vall d'Hebron Institute of Oncology-VHIO, Lab 2.02A, CELLEX CENTER, c/Natzaret, 115-117, 08035, Barcelona, Catalonia, Spain.
Vanessa BachOncogenetics Group, Vall d'Hebron Institute of Oncology-VHIO, Lab 2.02A, CELLEX CENTER, c/Natzaret, 115-117, 08035, Barcelona, Catalonia, Spain.
Estela CarrascoHigh Risk and Cancer Prevention Group, VHIO, Barcelona, Spain.
Neus GadeaHigh Risk and Cancer Prevention Group, VHIO, Barcelona, Spain.
Adrià López-FernándezHigh Risk and Cancer Prevention Group, VHIO, Barcelona, Spain.
Sara Torres-EsquiusHigh Risk and Cancer Prevention Group, VHIO, Barcelona, Spain.
Francesco MancusoCancer Genomics Group, Vall d'Hebron Institute of Oncology, VHIO, Barcelona, Spain.
Ginevra CaratúCancer Genomics Group, Vall d'Hebron Institute of Oncology, VHIO, Barcelona, Spain.
Ana VivancosCancer Genomics Group, Vall d'Hebron Institute of Oncology, VHIO, Barcelona, Spain.
Noemí TusetMedical Oncology Department, Hospital Universitari Arnau de Vilanova, Lleida, Spain.
Judith BalmañaHigh Risk and Cancer Prevention Group, VHIO, Barcelona, Spain.
Sara Gutiérrez-EnríquezOncogenetics Group, Vall d'Hebron Institute of Oncology-VHIO, Lab 2.02A, CELLEX CENTER, c/Natzaret, 115-117, 08035, Barcelona, Catalonia, Spain. sgutierrez@vhio.net.ORCID http://orcid.org/0000-0002-1711-6101
Orland DiezOncogenetics Group, Vall d'Hebron Institute of Oncology-VHIO, Lab 2.02A, CELLEX CENTER, c/Natzaret, 115-117, 08035, Barcelona, Catalonia, Spain. odiez@vhio.net.ORCID http://orcid.org/0000-0001-7339-0570
CIBBIM-Nanomedicine · ESSpanish Ovarian Cancer Research Group · ESVall d'Hebron Hospital Universitari · ESHebron University · PSHospital Universitari Arnau de Vilanova · ESUniversitat Autònoma de Barcelona · ESVall d'Hebron Institut de Recerca · ES

Funding

Instituto de Salud Carlos III CPII16/00034Instituto de Salud Carlos III PI12/02585Instituto de Salud Carlos III PI13/01711Instituto de Salud Carlos III PI15/00355Instituto de Salud Carlos III PI16/01218
6 · The paper itself

Abstract

purposeFew and small studies have been reported about multigene testing usage by massively parallel sequencing in European cancer families. There is an open debate about what genes should be tested, and the actionability of some included genes is under research.

methodsWe investigated a panel of 34 known high/moderate-risk cancer genes, including 16 related to breast or ovarian cancer (BC/OC) genes, and 63 candidate genes to BC/OC in 192 clinically suspicious of hereditary breast/ovarian cancer (HBOC) Spanish families without pathogenic variants in BRCA1 or BRCA2 (BRCA1/2).

resultsWe identified 16 patients who carried a high- or moderate-risk pathogenic variant in eight genes: 4 PALB2, 3 ATM, 2 RAD51D, 2 TP53, 2 APC, 1 BRIP1, 1 PTEN and 1 PMS2. These findings led to increased surveillance or prevention options in 12 patients and predictive testing in their family members. We detected 383 unique variants of uncertain significance in known cancer genes, of which 35 were prioritized in silico. Eighteen loss-of-function variants were detected in candidate BC/OC genes in 17 patients (1 BARD1, 1 ERCC3, 1 ERCC5, 2 FANCE, 1 FANCI, 2 FANCL, 1 FANCM, 1 MCPH1, 1 PPM1D, 2 RBBP8, 3 RECQL4 and 1 with SLX4 and XRCC2), three of which also carry pathogenic variants in known cancer genes.

conclusionsEight percent of the BRCA1/2 negative patients carry pathogenic variants in other actionable genes. The multigene panel usage improves the diagnostic yield in HBOC testing and it is an effective tool to identify potentially new candidate genes.

Indexed as

Biomarkers, TumorGenes, BRCA1Genes, BRCA2AdultAllelesComputational BiologyFemaleGenetic Predisposition to DiseaseGenetic TestingGenetic VariationHereditary Breast and Ovarian Cancer SyndromeHigh-Throughput Nucleotide SequencingHumansMiddle AgedNeoplasm StagingSequence Analysis, DNABiomarkers, TumorBRCA1 or BRCA2 negativeBreast/ovarian hereditary cancerClinical actionabilityPanel testing by massively parallel sequencing

Identifiers

PMID30306255
PMCPMC11813382
OpenAlexW2896089909

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.