Evidence map›Paper›PMID 30305632›Full record

ArticleNature communications2018

A guanine-flipping and sequestration mechanism for G-quadruplex unwinding by RecQ helicases.

Andrew F Voter, Yupeng Qiu, Ramreddy Tippana, Sua Myong, James L Keck

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 42 papers.

0numbers the graph read from it
0cells of the map it votes in
42citing papers in PubMed
3.2field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

42 citing papers in PubMed, 53 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Andrew F VoterDepartment of Biomolecular Chemistry, University of Wisconsin School of Medicine and Public Health, Madison, WI, 53706, USA.ORCID http://orcid.org/0000-0003-1691-0618
Yupeng QiuDepartment of Biophysics, Johns Hopkins University, Baltimore, MD, 21218, USA.
Ramreddy TippanaDepartment of Biophysics, Johns Hopkins University, Baltimore, MD, 21218, USA.
Sua MyongDepartment of Biophysics, Johns Hopkins University, Baltimore, MD, 21218, USA.
James L KeckDepartment of Biomolecular Chemistry, University of Wisconsin School of Medicine and Public Health, Madison, WI, 53706, USA. jlkeck@wisc.edu.ORCID http://orcid.org/0000-0002-5961-0220
Johns Hopkins University · USUniversity of Wisconsin–Madison · US

Funding

INTEGRATED TRAINING FOR PHYSICIAN-SCIENTISTST32GM008692 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI BURKARD, MARK E · 1998 to 2020
$10.3M
Structure and Function of the Bacterial PrimosomeR01GM098885 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI James L Keck · 2012 to 2026
$4.0M
Quantitative Analysis of G-Quadruplex Folding and its Role in Gene ExpressionR01GM115631 · NIGMS · JOHNS HOPKINS UNIVERSITY · PI MYONG, SUA · 2016 to 2019
$1.2M
Identification of chemosensitizing agents that block DNA repair by the Fanconi Anemia/Bloom Dissolvasome complexF30CA210465 · NCI · UNIVERSITY OF WISCONSIN-MADISON · PI VOTER, ANDREW FORD · 2016 to 2019
$118k
NCI NIH HHS F30 CA210465NIGMS NIH HHS R01 GM098885NIGMS NIH HHS R01 GM115631NIGMS NIH HHS T32 GM008692
6 · The paper itself

Abstract

Homeostatic regulation of G-quadruplexes (G4s), four-stranded structures that can form in guanine-rich nucleic acids, requires G4 unwinding helicases. The mechanisms that mediate G4 unwinding remain unknown. We report the structure of a bacterial RecQ DNA helicase bound to resolved G4 DNA. Unexpectedly, a guanine base from the unwound G4 is sequestered within a guanine-specific binding pocket. Disruption of the pocket in RecQ blocks G4 unwinding, but not G4 binding or duplex DNA unwinding, indicating its essential role in structure-specific G4 resolution. A novel guanine-flipping and sequestration model that may be applicable to other G4-resolving helicases emerges from these studies.

Indexed as

G-QuadruplexesBinding SitesCronobacter sakazakiiGuanineModels, BiologicalNucleic Acid HeteroduplexesProtein BindingRecQ HelicasesSubstrate SpecificityGuanineNucleic Acid HeteroduplexesRecQ Helicases

Identifiers

PMID30305632
PMCPMC6180126
OpenAlexW2894705542

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.