Evidence map›Paper›PMID 30305622›Full record

ArticleNature communications2018

Host-associated niche metabolism controls enteric infection through fine-tuning the regulation of type 3 secretion.

James P R Connolly, Sabrina L Slater, Nicky O'Boyle, Robert J Goldstone, Valerie F Crepin, David Ruano-Gallego, Pawel Herzyk, David G E Smith, Gillian R Douce, Gad Frankel and 1 more

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in Nature communications, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 35 papers.

0numbers the graph read from it
0cells of the map it votes in
35citing papers in PubMed
5.5field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

35 citing papers in PubMed, 65 citations in OpenAlex.

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  17. Distinct ecological fitness factors coordinated by a conservedProceedings of the National Academy of Sciences of the United States of America · 2023
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 1 country.

James P R ConnollyInstitute of Infection, Immunity and Inflammation, University of Glasgow, Glasgow, G12 8TA, UK. James.Connolly@glasgow.ac.uk.ORCID http://orcid.org/0000-0002-0394-3413
Sabrina L SlaterMRC Centre for Molecular Bacteriology and Infection, Department of Life Sciences, Imperial College, London, SW7 2AZ, UK.
Nicky O'BoyleInstitute of Infection, Immunity and Inflammation, University of Glasgow, Glasgow, G12 8TA, UK.
Robert J GoldstoneSchool of Life Science, Heriot-Watt University, Edinburgh, EH14 4AS, UK.
Valerie F CrepinMRC Centre for Molecular Bacteriology and Infection, Department of Life Sciences, Imperial College, London, SW7 2AZ, UK.
David Ruano-GallegoMRC Centre for Molecular Bacteriology and Infection, Department of Life Sciences, Imperial College, London, SW7 2AZ, UK.ORCID http://orcid.org/0000-0002-2163-2088
Pawel HerzykGlasgow Polyomics, Wolfson Wohl Cancer Research Centre, University of Glasgow, Garscube Estate, Glasgow, G61 1QH, UK.
David G E SmithSchool of Life Science, Heriot-Watt University, Edinburgh, EH14 4AS, UK.ORCID http://orcid.org/0000-0002-2484-2603
Gillian R DouceInstitute of Infection, Immunity and Inflammation, University of Glasgow, Glasgow, G12 8TA, UK.
Gad FrankelMRC Centre for Molecular Bacteriology and Infection, Department of Life Sciences, Imperial College, London, SW7 2AZ, UK.ORCID http://orcid.org/0000-0002-0046-1363
Andrew J RoeInstitute of Infection, Immunity and Inflammation, University of Glasgow, Glasgow, G12 8TA, UK. Andrew.Roe@glasgow.ac.uk.
Imperial College London · GBUniversity of Glasgow · GBHeriot-Watt University · GBWellcome Centre for Molecular Parasitology · GB

Funding

Medical Research Council MR/P028225/1Wellcome TrustWellcome Trust 105614/Z/14/Z, 204820/Z/16/Z, 107057/Z/15/Z
6 · The paper itself

Abstract

Niche-adaptation of a bacterial pathogen hinges on the ability to recognize the complexity of signals from the environment and integrate that information with the regulation of genes critical for infection. Here we report the transcriptome of the attaching and effacing pathogen Citrobacter rodentium during infection of its natural murine host. Pathogen gene expression in vivo was heavily biased towards the virulence factor repertoire and was found to be co-ordinated uniquely in response to the host. Concordantly, we identified the host-specific induction of a metabolic pathway that overlapped with the regulation of virulence. The essential type 3 secretion system and an associated suite of distinct effectors were found to be modulated co-ordinately through a unique mechanism involving metabolism of microbiota-derived 1,2-propanediol, which dictated the ability to colonize the host effectively. This study provides novel insights into how host-specific metabolic adaptation acts as a cue to fine-tune virulence.

Indexed as

Bacterial Secretion SystemsHost-Pathogen InteractionsAnimalsBacterial AdhesionCitrobacter rodentiumEnterobacteriaceae InfectionsGene Expression Regulation, BacterialHeLa CellsHumansMetabolomicsMice, Inbred BALB CMice, Inbred C57BLPropylene GlycolSequence Analysis, RNATranscriptomeVirulenceBacterial Secretion SystemsPropylene GlycolVirulence Factors

Identifiers

PMID30305622
PMCPMC6180029
OpenAlexW2894873183

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.