Evidence map›Paper›PMID 30305425›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2018

The structural basis for cancer drug interactions with the catalytic and allosteric sites of SAMHD1.

Kirsten M Knecht, Olga Buzovetsky, Constanze Schneider, Dominique Thomas, Vishok Srikanth, Lars Kaderali, Florentina Tofoleanu, Krystle Reiss, Nerea Ferreirós, Gerd Geisslinger and 5 more

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers.

0numbers the graph read from it
0cells of the map it votes in
35citing papers in PubMed
5.0field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

35 citing papers in PubMed, 58 citations in OpenAlex.

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  7. CDADC1 is a vertebrate-specific dCTP deaminase that metabolizes gemcitabine and decitabine to prevent cellular toxicity.Proceedings of the National Academy of Sciences of the United States of America · 2025
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  20. SAMHD1 in cancer: curse or cure?Journal of molecular medicine (Berlin, Germany) · 2022
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 6 institutions in 3 countries.

Kirsten M KnechtDepartment of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT 06520.
Olga BuzovetskyDepartment of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT 06520.
Constanze SchneiderInstitute of Medical Virology, University Hospital Frankfurt, 60596 Frankfurt, Germany.
Dominique ThomasInstitute of Clinical Pharmacology, Pharmazentrum Frankfurt, Goethe University of Frankfurt, 60590 Frankfurt, Germany.
Vishok SrikanthDepartment of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT 06520.
Lars KaderaliInstitute of Bioinformatics, University Medicine Greifswald, 17475 Greifswald, Germany.
Florentina TofoleanuDepartment of Chemistry, Yale University, New Haven, CT 06520.
Krystle ReissDepartment of Chemistry, Yale University, New Haven, CT 06520.
Nerea FerreirósInstitute of Clinical Pharmacology, Pharmazentrum Frankfurt, Goethe University of Frankfurt, 60590 Frankfurt, Germany.
Gerd GeisslingerInstitute of Clinical Pharmacology, Pharmazentrum Frankfurt, Goethe University of Frankfurt, 60590 Frankfurt, Germany.
Victor S BatistaDepartment of Chemistry, Yale University, New Haven, CT 06520.ORCID 0000-0002-3262-1237
Xiaoyun JiThe State Key Laboratory of Pharmaceutical Biotechnology, School of Life Sciences, Nanjing University, Nanjing, 210023 Jiangsu, China.
Jindrich CinatlInstitute of Medical Virology, University Hospital Frankfurt, 60596 Frankfurt, Germany.
Oliver T KepplerMax von Pettenkofer-Institute, Department of Virology, Ludwig Maximilians University, 80336 Munich, Germany.
Yong XiongDepartment of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT 06520; yong.xiong@yale.edu.
Yale University · USGoethe University Frankfurt · DELudwig-Maximilians-Universität München · DENanjing University · CNNational Institutes of Health · USUniversitätsmedizin Greifswald · DE

Funding

Skill Development for Diverse Scientific Careers: A New Course Predoctoral Program in Cellular and Molecular BiologyT32GM007223 · NIGMS · YALE UNIVERSITY · PI BASERGA, SUSAN J · 1985 to 2019
$31.0M
Overall EvaluationP41GM103403 · NIGMS · CORNELL UNIVERSITY · PI EALICK, STEVEN E · 2012 to 2017
$14.3M
PREDOCTORAL PROGRAM IN BIOPHYSICST32GM008283 · NIGMS · YALE UNIVERSITY · PI XIONG, YONG · 1988 to 2022
$10.5M
Pixel Array Detector for X-ray CrystallographyS10RR029205 · NCRR · CORNELL UNIVERSITY · PI EALICK, STEVEN E · 2010 to 2010
$1.8M
Comparative structure and function analyses of human and mouse SAMHD1 proteinsR21AI136737 · NIAID · YALE UNIVERSITY · PI XIONG, YONG · 2018 to 2019
$465k
Molecular basis of HIV restriction by SAMHD1K99AI120845 · NIAID · YALE UNIVERSITY · PI JI, XIAOYUN · 2015 to 2016
$209k
NCRR NIH HHS S10 RR029205NIAID NIH HHS K99 AI120845NIAID NIH HHS R21 AI136737NIGMS NIH HHS P41 GM103403NIGMS NIH HHS T32 GM007223NIGMS NIH HHS T32 GM008283
6 · The paper itself

Abstract

SAMHD1 is a deoxynucleoside triphosphate triphosphohydrolase (dNTPase) that depletes cellular dNTPs in noncycling cells to promote genome stability and to inhibit retroviral and herpes viral replication. In addition to being substrates, cellular nucleotides also allosterically regulate SAMHD1 activity. Recently, it was shown that high expression levels of SAMHD1 are also correlated with significantly worse patient responses to nucleotide analog drugs important for treating a variety of cancers, including acute myeloid leukemia (AML). In this study, we used biochemical, structural, and cellular methods to examine the interactions of various cancer drugs with SAMHD1. We found that both the catalytic and the allosteric sites of SAMHD1 are sensitive to sugar modifications of the nucleotide analogs, with the allosteric site being significantly more restrictive. We crystallized cladribine-TP, clofarabine-TP, fludarabine-TP, vidarabine-TP, cytarabine-TP, and gemcitabine-TP in the catalytic pocket of SAMHD1. We found that all of these drugs are substrates of SAMHD1 and that the efficacy of most of these drugs is affected by SAMHD1 activity. Of the nucleotide analogs tested, only cladribine-TP with a deoxyribose sugar efficiently induced the catalytically active SAMHD1 tetramer. Together, these results establish a detailed framework for understanding the substrate specificity and allosteric activation of SAMHD1 with regard to nucleotide analogs, which can be used to improve current cancer and antiviral therapies.

Indexed as

Allosteric SiteAntineoplastic AgentsCatalytic DomainCell Line, TumorCrystallography, X-RayDrug InteractionsHL-60 CellsHumansLeukemia, Myeloid, AcuteNucleotidesSAM Domain and HD Domain-Containing Protein 1Substrate SpecificityAntineoplastic AgentsNucleotidesSAM Domain and HD Domain-Containing Protein 1SAMHD1 protein, humanallosteric regulationdNTPasenucleotide analog drugsSAMHD1substrate selection

Identifiers

PMID30305425
PMCPMC6205433
OpenAlexW2796071420

What OpenQuestion holds

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Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.