Evidence map›Paper›PMID 30305031›Full record

ArticleBMC microbiology2018

Architecture of divergent flagellar promoters controlled by CtrA in Rhodobacter sphaeroides.

Anet Rivera-Osorio, Aurora Osorio, Sebastian Poggio, Georges Dreyfus, Laura Camarena

Abstract read
In one paragraph

Article in BMC microbiology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Hybrid Histidine Kinase WelA ofFrontiers in microbiology · 2022
    Article
  5. Review
  6. Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Anet Rivera-OsorioInstituto de Investigaciones Biomédicas, Universidad Nacional Autónoma de México, México City, México.
Aurora OsorioInstituto de Investigaciones Biomédicas, Universidad Nacional Autónoma de México, México City, México.
Sebastian PoggioInstituto de Investigaciones Biomédicas, Universidad Nacional Autónoma de México, México City, México.
Georges DreyfusInstituto de Fisiología Celular, Universidad Nacional Autónoma de México, México City, México. gdreyfus@ifc.unam.mx.
Laura CamarenaInstituto de Investigaciones Biomédicas, Universidad Nacional Autónoma de México, México City, México. rosal@unam.mx.ORCID 0000-0003-0344-6000

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundRhodobacter sphaeroides has two sets of flagellar genes, fla1 and fla2, that are responsible for the synthesis of two different flagellar structures. The expression of the fla2 genes is under control of CtrA. In several α-proteobacteria CtrA is also required for the expression of the flagellar genes, but the architecture of CtrA-dependent promoters has only been studied in detail in Caulobacter crescentus. In many cases the expression of fla genes originates from divergent promoters located a few base pairs apart, suggesting a particular arrangement of the cis-acting sites.

resultsHere we characterized several control regions of the R. sphaeroides fla2 genes and analyzed in detail two regions containing the divergent promoters flgB2p-fliI2p, and fliL2p-fliF2p. Binding sites for CtrA of these promoters were identified in silico and tested by site directed mutagenesis. We conclude that each one of these promoter regions has a particular arrangement, either a single CtrA binding site for activation of fliL2p and fliF2p, or two independent sites for activation of flgB2p and fliI2p. ChIP experiments confirmed that CtrA binds to the control region containing the flgB2 and fliI2 promoters, supporting the notion that CtrA directly controls the expression of the fla2 genes. The flgB and fliI genes are syntenic and show a short intercistronic region in closely related bacterial species. We analyzed these regions and found that the arrangement of the CtrA binding sites varies considerably.

conclusionsThe results in this work reveal the arrangement of the fla2 divergent promoters showing that CtrA promotes transcriptional activation using more than a single architecture.

Indexed as

Promoter Regions, GeneticTranscriptional ActivationBacterial ProteinsBinding SitesChemotaxisDNA-Binding ProteinsDNA, IntergenicFlagellaGene Expression Regulation, BacterialRhodobacter sphaeroidesBacterial ProteinsDNA-Binding ProteinsDNA, IntergenicBacterial flagellumCtrADivergent promotersRhodobacter sphaeroides

Identifiers

PMID30305031
PMCPMC6180460

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.