Evidence map›Paper›PMID 30304818›Full record

ArticleViruses2018

Genetic Characterization and Pathogenicity of a Novel Recombined Porcine Reproductive and Respiratory Syndrome Virus 2 among Nadc30-Like, Jxa1-Like, and Mlv-Like Strains.

Long Zhou, Runmin Kang, Jifeng Yu, Bo Xie, Changying Chen, Xingyu Li, Jing Xie, Yonggang Ye, Lu Xiao, Jinling Zhang and 2 more

Open access · goldAbstract read
In one paragraph

Article in Viruses, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 47 papers.

0numbers the graph read from it
0cells of the map it votes in
47citing papers in PubMed
9.2field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

47 citing papers in PubMed, 77 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 2 institutions in 1 country.

Long ZhouSchool of Life Science, Sichuan University, Animal Disease Prevention and Food Safety Key Laboratory of Sichuan Province, Key Laboratory of Bio-resources and Eco-environment, Ministry of Education, Chengdu 610064, Sichuan, China. 2014322040041@stu.scu.edu.cn.
Runmin KangSichuan Animal Science Academy, Sichuan Provincial Key laboratory of Animal Breeding and Genetics, Chengdu 610066, Sichuan, China. angelina_0708@hotmail.com.
Jifeng YuSichuan Animal Science Academy, Sichuan Provincial Key laboratory of Animal Breeding and Genetics, Chengdu 610066, Sichuan, China. yujifeng2009@sohu.com.
Bo XieChengdu Chia Tai Agro-industry & Food, Animal healthy disease service, Chengdu 610081, Sichuan, China. bobosky123@163.com.
Changying ChenChengdu Chia Tai Agro-industry & Food, Animal healthy disease service, Chengdu 610081, Sichuan, China. ccyenanging@163.com.
Xingyu LiSichuan Animal Science Academy, Sichuan Provincial Key laboratory of Animal Breeding and Genetics, Chengdu 610066, Sichuan, China. xinyue199@aliyun.com.
Jing XieSichuan Animal Science Academy, Sichuan Provincial Key laboratory of Animal Breeding and Genetics, Chengdu 610066, Sichuan, China. xiemm75@163.com.
Yonggang YeSichuan Animal Science Academy, Sichuan Provincial Key laboratory of Animal Breeding and Genetics, Chengdu 610066, Sichuan, China. yeyg0202@sina.com.
Lu XiaoSichuan Animal Science Academy, Sichuan Provincial Key laboratory of Animal Breeding and Genetics, Chengdu 610066, Sichuan, China. yaanxiaolu@163.com.
Jinling ZhangSichuan Animal Science Academy, Sichuan Provincial Key laboratory of Animal Breeding and Genetics, Chengdu 610066, Sichuan, China. m13084448812_1@163.com.
Xin YangSchool of Life Science, Sichuan University, Animal Disease Prevention and Food Safety Key Laboratory of Sichuan Province, Key Laboratory of Bio-resources and Eco-environment, Ministry of Education, Chengdu 610064, Sichuan, China. xinyang@scu.edu.cn.
Hongning WangSchool of Life Science, Sichuan University, Animal Disease Prevention and Food Safety Key Laboratory of Sichuan Province, Key Laboratory of Bio-resources and Eco-environment, Ministry of Education, Chengdu 610064, Sichuan, China. whongning@163.com.
Sichuan Animal Science Academy · CNSichuan University · CN

Funding

the Applied Basic Research Program of Science and Technology Department of Sichuan Province 2018JY0640the Major Science and Technology Projects in Sichuan Province 2018NZDZX0006the Program for Pig Industry Technology System Innovation Team of Sichuan Province sccxtd-004the Public Welfare Scientific Research Institutes Basic Research Projects SASA2017A07the Science & Technology Support Program of Sichuan 2016NYZ0042, 2016NYZ0026, 2016NZ0108, and 2016NZ0006the Special Finance of Sichuan SASA2014CZYX009the Transformation Fund of Scientific and Technological Achievements of Scientific Research Institutes in Sichuan Province 2018YSZH0005the Transformation of Agricultural Achievements in Sichuan Province 2018NZZJ008
6 · The paper itself

Abstract

Recombination among porcine reproductive and respiratory syndrome viruses (PRRSVs), coupled with point mutations, insertions, and deletions occurring in the genome, is considered to contribute to the emergence of new variants. Here, we report the complete genome sequences of a PRRSV field strain, designated SCN17, isolated from a RespPRRS MLV-vaccinated piglet in China in 2017. Sequence alignment revealed that SCN17 had discontinuous 131-amino acid (111 + 1 + 19-aa) deletion in the NSP2-coding region identical to that of NADC30 when compared to VR-2332. Notably, the strain, SCN17, contained an additional 1-aa deletion in NSP2, a 1-aa deletion in ORF5, and a unique 3-nt deletion in the 3'-UTR. Phylogenetic analysis showed that SCN17 clustered into NADC30-like lineage based on ORF5 genotyping, whereas it belonged to an inter-lineage between the NADC30-like and VR-2332-like lineages as established based on the full-length genome. Importantly, the SCN17 was identified as a novel virus recombined between a NADC30-like (moderately pathogenic), a JXA1-like (highly pathogenic), and an attenuated vaccine strain, RespPRRS MLV (parental strain VR-2332). Furthermore, we tested its pathogenicity in piglets. SCN17 infection caused a persistent fever, moderate interstitial pneumonia, and increased the viremia and antibody levels in the inoculated piglets. Of note, all SCN17-infected piglets survived throughout the study. The new virus was showed to be a moderately virulent isolate and have lower pathogenicity than HP-PRRSV strain, SCwhn09CD. Our results provide evidence for the continuing evolution of PRRSV field strain by genetic recombination and mutation leading to outbreaks in the vaccinated pig populations in China.

Indexed as

Recombination, GeneticAmino Acid SequenceAnimalsBase SequenceGenetic VariationGenome, ViralMolecular Sequence DataPhylogenyPorcine Reproductive and Respiratory SyndromePorcine respiratory and reproductive syndrome virusSequence AlignmentSequence DeletionSwineViral ProteinsVirulenceViral Proteinsmodified live virus (MLV)mutationpathogenicityporcine reproductive and respiratory syndrome virus (PRRSV)recombination

Identifiers

PMID30304818
PMCPMC6213465
OpenAlexW2897739446

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.