Evidence map›Paper›PMID 30304780›Full record

ArticleViruses2018

Recombinant GII.P16/GII.4 Sydney 2012 Was the Dominant Norovirus Identified in Australia and New Zealand in 2017.

Jennifer H Lun, Joanne Hewitt, Grace J H Yan, Daniel Enosi Tuipulotu, William D Rawlinson, Peter A White

Open access · goldAbstract read
In one paragraph

Article in Viruses, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers.

0numbers the graph read from it
0cells of the map it votes in
35citing papers in PubMed
3.8field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

35 citing papers in PubMed, 54 citations in OpenAlex.

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  20. Epidemiology and evolution of Norovirus in China.Human vaccines & immunotherapeutics · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Jennifer H LunSchool of Biotechnology and Biomolecular Sciences, Faculty of Science, University of New South Wales, Sydney 2052, NSW, Australia. j.lun@unsw.edu.au.ORCID 0000-0003-4358-1151
Joanne HewittInstitute of Environmental Science and Research, Kenepuru Science Centre, Porirua 5022, New Zealand. joanne.hewitt@esr.cri.nz.ORCID 0000-0003-0370-6394
Grace J H YanSchool of Biotechnology and Biomolecular Sciences, Faculty of Science, University of New South Wales, Sydney 2052, NSW, Australia. grace.j.yan@unsw.edu.au.
Daniel Enosi TuipulotuSchool of Biotechnology and Biomolecular Sciences, Faculty of Science, University of New South Wales, Sydney 2052, NSW, Australia. d.enosi@unsw.edu.au.ORCID 0000-0002-6442-4633
William D RawlinsonSchool of Biotechnology and Biomolecular Sciences, Faculty of Science, University of New South Wales, Sydney 2052, NSW, Australia. w.rawlinson@unsw.edu.au.
Peter A WhiteSchool of Biotechnology and Biomolecular Sciences, Faculty of Science, University of New South Wales, Sydney 2052, NSW, Australia. p.white@unsw.edu.au.ORCID 0000-0002-6046-9631
UNSW Sydney · AUNew Zealand Institute for Public Health and Forensic Science · NZ

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

For the past two decades, norovirus pandemic variants have emerged every 3⁻5 years, and dominate until they are replaced by alternate strains. However, this scenario changed in 2016 with the co-circulation of six prevalent viruses, three of which possessed the pandemic GII.4 Sydney 2012 capsid. An increased number of institutional gastroenteritis outbreaks were reported within the Oceania region in mid-2017. This study identified emerging noroviruses circulating in Australia and New Zealand in 2017 to assess the changing dynamics of the virus infection. RT-PCR-based methods, next generation sequencing, and phylogenetic analyses were used to genotype noroviruses from both clinical and wastewater samples. Antigenic changes were observed between the capsid of pandemic Sydney 2012 variant and the two new Sydney recombinant viruses. The combination of these antigenic changes and the acquisition of a new ORF1 through recombination could both facilitate their ongoing persistence in the population. Overall, an increased prevalence of GII.P16/GII.4 Sydney 2012 viruses was observed in 2017, replacing the GII.P16/GII.2 recombinant that dominated in the region at the end of 2016. This shift in strain dominance was also observed in wastewater samples, demonstrating the reliability of wastewater as a molecular surveillance tool.

Indexed as

Recombination, GeneticAustraliaCapsid ProteinsGastroenteritisGenotypeHumansMolecular EpidemiologyNew ZealandNorovirusOpen Reading FramesPhylogenyWastewaterCapsid ProteinsWastewaterAustraliaclinicalgenetic diversityMiSeqmolecular epidemiologyNew Zealandnext generation sequencingnorovirusrecombinantwastewater

Identifiers

PMID30304780
PMCPMC6213408
OpenAlexW2896135221

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.