ArticleHorticulture research2018
Comparative proteomic analysis provides insight into a complex regulatory network of taproot formation in radish (
Article in Horticulture research, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.
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19 citing papers in PubMed, 49 citations in OpenAlex.
- The origin and domestication of modern cultivated Chrysanthemum × morifolium.Nature plants · 2026Article
- Proteome and Metabolome Alterations in Radish (Biomolecules · 2025Article
- Exogenous gibberellin suppressed taproot secondary thickening by inhibiting the formation and maintenance of vascular cambium in radish (Frontiers in plant science · 2024Article
- Article
- Transcriptomic Analysis of Distal Parts of Roots Reveals Potentially Important Mechanisms Contributing to Limited Flooding Tolerance of Canola (International journal of molecular sciences · 2022Article
- Transcriptomic analysis of tuberous root in two sweet potato varieties reveals the important genes and regulatory pathways in tuberous root development.BMC genomics · 2022Article
- Roles of Abscisic Acid and Gibberellins in Stem/Root Tuber Development.International journal of molecular sciences · 2022Review
- Improvement of Germination and Early Growth of Radish (Plants (Basel, Switzerland) · 2022Article
- Transcriptomic analysis of succulent stem development of Chinese kale (Frontiers in plant science · 2022Article
- Genomic insights into the origin, domestication and diversification of Brassica juncea.Nature genetics · 2021Article
- Identification of a major and stable QTL on chromosome 5A confers spike length in wheat (Molecular breeding : new strategies in plant improvement · 2021Article
- Article
- QTL Mapping and Candidate Gene Identification of Swollen Root Formation in Turnip.International journal of molecular sciences · 2021Article
- Effects of Elevated COFrontiers in plant science · 2021Article
- Genome-wide sRNA and mRNA transcriptomic profiling insights into dynamic regulation of taproot thickening in radish (Raphanus sativus L.).BMC plant biology · 2020Article
- Characterization of theInternational journal of molecular sciences · 2020Article
- Comparative transcriptome and metabolome analyses provide new insights into the molecular mechanisms underlying taproot thickening in Panax notoginseng.BMC plant biology · 2019Article
- Article
- Zinc and Cadmium Mapping in the Apical Shoot and Hypocotyl Tissues of Radish by High-Resolution Secondary Ion Mass Spectrometry (NanoSIMS) after Short-Term Exposure to Metal Contamination.International journal of environmental research and public health · 2019Article
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Authors and funding
8 authors at 2 institutions in 2 countries.
Funding
No grant is acknowledged in the PubMed record.
Abstract
The fleshy taproot of radish is an important storage organ determining its yield and quality. Taproot thickening is a complex developmental process in radish. However, the molecular mechanisms governing this process remain unclear at the proteome level. In this study, a comparative proteomic analysis was performed to analyze the proteome changes at three developmental stages of taproot thickening using iTRAQ approach. In total, 1862 differentially expressed proteins (DEPs) were identified from 6342 high-confidence proteins, among which 256 up-regulated proteins displayed overlapped accumulation in S1 (pre-cortex splitting stage) vs. S2 (cortex splitting stage) and S1 vs. S3 (expanding stage) pairs, whereas 122 up-regulated proteins displayed overlapped accumulation in S1 vs. S3 and S2 vs. S3 pairs. Gene Ontology (GO) and pathway enrichment analysis showed that these DEPs were mainly involved in several processes such as "starch and sucrose metabolism", "plant hormone signal transduction", and "biosynthesis of secondary metabolites". A high concordance existed between iTRAQ and RT-qPCR at the mRNA expression levels. Furthermore, association analysis showed that 187, 181, and 96 DEPs were matched with their corresponding differentially expressed genes (DEGs) in S1 vs. S2, S1 vs. S3, and S2 vs. S3 comparison, respectively. Notably, several functional proteins including cell division cycle 5-like protein (CDC5), expansin B1 (EXPB1), and xyloglucan endotransglucosylase/hydrolase protein 24 (XTH24) were responsible for cell division and expansion during radish taproot thickening process. These results could facilitate a better understanding of the molecular mechanism underlying taproot thickening, and provide valuable information for the identification of critical genes/proteins responsible for taproot thickening in root vegetable crops.
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Registered trials
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