Evidence map›Paper›PMID 30301483›Full record

ArticleParasitology2019

A tale of three kingdoms: members of the Phylum Nematoda independently acquired the detoxifying enzyme cyanase through horizontal gene transfer from plants and bacteria.

D S Zarlenga, M Mitreva, P Thompson, R Tyagi, W Tuo, E P Hoberg

Open access · greenAbstract read
In one paragraph

Article in Parasitology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.0field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 13 citations in OpenAlex.

  1. Article
  2. Over a century of progress onFood and waterborne parasitology · 2024
    Review
  3. Review
  4. Structural mechanism of Escherichia coli cyanase.Acta crystallographica. Section D, Structural biology · 2023
    Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

D S ZarlengaUSDA, Agricultural Research Service, Animal Parasitic Diseases Lab,Beltsville, MD 20705USA.ORCID 0000-0002-8845-1724
M MitrevaThe Genome Institute, Washington University School of Medicine,St. Louis, MO 63108,USA.
P ThompsonUSDA, Agricultural Research Service, Animal Parasitic Diseases Lab,Beltsville, MD 20705USA.
R TyagiThe Genome Institute, Washington University School of Medicine,St. Louis, MO 63108,USA.
W TuoUSDA, Agricultural Research Service, Animal Parasitic Diseases Lab,Beltsville, MD 20705USA.ORCID 0000-0002-3764-8981
E P HobergUSDA, Agricultural Research Service, Animal Parasitic Diseases Lab,Beltsville, MD 20705USA.
Agricultural Research Service · USWashington University in St. Louis · US

Funding

COMPARATIVE GENOMICS OF PARASITIC NEMATODESR01AI081803 · NIAID · WASHINGTON UNIVERSITY · PI MITREVA, MAKEDONKA · 2009 to 2018
$3.1M
EVOLUTION OF THE NEMATODE INTESTINE, A KEY HOST INTERFACER01GM097435 · NIGMS · WASHINGTON UNIVERSITY · PI MITREVA, MAKEDONKA · 2011 to 2019
$2.1M
NIAID NIH HHS R01 AI081803NIGMS NIH HHS R01 GM097435
6 · The paper itself

Abstract

Horizontal gene transfer (HGT) has played an important role in the evolution of nematodes. Among candidate genes, cyanase, which is typically found only in plants, bacteria and fungi, is present in more than 35 members of the Phylum Nematoda, but absent from free-living and clade V organisms. Phylogenetic analyses showed that the cyanases of clade I organisms Trichinella spp., Trichuris spp. and Soboliphyme baturini (Subclass: Dorylaimia) represent a well-supported monophyletic clade with plant cyanases. In contrast, all cyanases found within the Subclass Chromadoria which encompasses filarioids, ascaridoids and strongyloids are homologous to those of bacteria. Western blots exhibited typical multimeric forms of the native molecule in protein extracts of Trichinella spiralis muscle larvae, where immunohistochemical staining localized the protein to the worm hypodermis and underlying muscle. Recombinant Trichinella cyanase was bioactive where gene transcription profiles support functional activity in vivo. Results suggest that: (1) independent HGT in parasitic nematodes originated from different Kingdoms; (2) cyanase acquired an active role in the biology of extant Trichinella; (3) acquisition occurred more than 400 million years ago (MYA), prior to the divergence of the Trichinellida and Dioctophymatida, and (4) early, free-living ancestors of the genus Trichinella had an association with terrestrial plants.

Indexed as

Biological EvolutionGene Transfer, HorizontalAnimalsBacteriaCarbon-Nitrogen LyasesHelminth ProteinsNematodaPlantsCarbon-Nitrogen Lyasescyanate hydrolaseHelminth ProteinsCyanaseevolutionhorizontal gene transfernematodeparasitismTrichinella

Identifiers

PMID30301483
PMCPMC6422719
OpenAlexW2896462713

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.