Evidence map›Paper›PMID 30300945›Full record

ArticleThe New phytologist2019

Quantitative phosphoproteomic analysis reveals common regulatory mechanisms between effector- and PAMP-triggered immunity in plants.

Yasuhiro Kadota, Thomas W H Liebrand, Yukihisa Goto, Jan Sklenar, Paul Derbyshire, Frank L H Menke, Miguel-Angel Torres, Antonio Molina, Cyril Zipfel, Gitta Coaker and 1 more

Open access · bronzeAbstract read
In one paragraph

Article in The New phytologist, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 57 papers.

0numbers the graph read from it
0cells of the map it votes in
57citing papers in PubMed
25.7field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

57 citing papers in PubMed, 160 citations in OpenAlex.

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  10. Pattern Recognition Receptors in Plant Immunity.Advances in experimental medicine and biology · 2025
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  15. Genomic insights into local adaptation of upland cotton in China and Pakistan.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2024
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  16. OsACA9, an Autoinhibited CaInternational journal of molecular sciences · 2024
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

11 authors at 5 institutions in 5 countries.

Yasuhiro KadotaRIKEN Center for Sustainable Resource Science, Plant Immunity Research Group, Suehiro-cho 1-7-22 Tsurumi-ku, Yokohama, 230-0045, Japan.ORCID 0000-0002-4782-1418
Thomas W H LiebrandDepartment of Plant Pathology, University of California Davis, One Shields Avenue, Davis, CA, 95616, USA.ORCID 0000-0003-1969-4148
Yukihisa GotoRIKEN Center for Sustainable Resource Science, Plant Immunity Research Group, Suehiro-cho 1-7-22 Tsurumi-ku, Yokohama, 230-0045, Japan.ORCID 0000-0003-3616-320X
Jan SklenarThe Sainsbury Laboratory, Norwich Research Park, Norwich, NR4 7UH, UK.ORCID 0000-0003-1858-2574
Paul DerbyshireThe Sainsbury Laboratory, Norwich Research Park, Norwich, NR4 7UH, UK.ORCID 0000-0002-5095-9397
Frank L H MenkeThe Sainsbury Laboratory, Norwich Research Park, Norwich, NR4 7UH, UK.ORCID 0000-0003-2490-4824
Miguel-Angel TorresCentro de Biotecnología y Genómica de Plantas, Universidad Politécnica de Madrid (UPM)-Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria (INIA), Campus Montegancedo UPM, 28223, Pozuelo de Alarcón (Madrid), Spain.ORCID 0000-0002-0435-1786
Antonio MolinaCentro de Biotecnología y Genómica de Plantas, Universidad Politécnica de Madrid (UPM)-Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria (INIA), Campus Montegancedo UPM, 28223, Pozuelo de Alarcón (Madrid), Spain.ORCID 0000-0003-3137-7938
Cyril ZipfelThe Sainsbury Laboratory, Norwich Research Park, Norwich, NR4 7UH, UK.ORCID 0000-0003-4935-8583
Gitta CoakerDepartment of Plant Pathology, University of California Davis, One Shields Avenue, Davis, CA, 95616, USA.ORCID 0000-0003-0899-2449
Ken ShirasuRIKEN Center for Sustainable Resource Science, Plant Immunity Research Group, Suehiro-cho 1-7-22 Tsurumi-ku, Yokohama, 230-0045, Japan.ORCID 0000-0002-0349-3870
Norwich Research Park · GBRIKEN Center for Sustainable Resource Science · JPInstituto Nacional de Investigación y Tecnología Agraria y Alimentaria · ESUniversity of California, Davis · USUniversity of Zurich · CH

Funding

Elucidating RIN4_Mediated Immune Signaling Cascades in ArabidopsisR01GM092772 · NIGMS · UNIVERSITY OF CALIFORNIA AT DAVIS · PI COAKER, GITTA LAUREL · 2010 to 2018
$2.8M
European Research CouncilMEXT/JSPS KAKENHI JP15H05959MEXT/JSPS KAKENHI JP16H06186MEXT/JSPS KAKENHI JP16J0071MEXT/JSPS KAKENHI JP16KT0037MEXT/JSPS KAKENHI JP17H06172Ministerio de Economía y Competitividad of Spain BIO2015-64077-RNational Institute of Health RO1GM092772Netherlands Organisation for Scientific Research (NWO)NIGMS NIH HHS R01 GM092772The Gatsby Charitable FoundationUS Department of Agriculture USDA-NIFA 2015-67013-23082
6 · The paper itself

Abstract

Plant immunity consists of two arms: pathogen-associated molecular pattern (PAMP)-triggered immunity (PTI), induced by surface-localized receptors, and effector-triggered immunity (ETI), induced by intracellular receptors. Despite the little structural similarity, both receptor types activate similar responses with different dynamics. To better understand phosphorylation events during ETI, we employed a phosphoproteomic screen using an inducible expression system of the bacterial effector avrRpt2 in Arabidopsis thaliana, and identified 109 differentially phosphorylated residues of membrane-associated proteins on activation of the intracellular RPS2 receptor. Interestingly, several RPS2-regulated phosphosites overlap with sites that are regulated during PTI, suggesting that these phosphosites may be convergent points of both signaling arms. Moreover, some of these sites are residues of important defense components, including the NADPH oxidase RBOHD, ABC-transporter PEN3, calcium-ATPase ACA8, noncanonical Gα protein XLG2 and H

Indexed as

Plant ImmunityProteomicsArabidopsisArabidopsis ProteinsAutoimmunityGene Expression Regulation, PlantMutationPathogen-Associated Molecular Pattern MoleculesPhenotypePhosphoproteinsPhosphorylationProton-Translocating ATPasesPseudomonas syringaeReactive Oxygen SpeciesVirulenceArabidopsis ProteinsPathogen-Associated Molecular Pattern MoleculesPhosphoproteinsProton-Translocating ATPasesReactive Oxygen SpeciesArabidopsisbacteriaeffectorsfungipathogen-associated molecular patterns (PAMPs)plant immunityprotein phosphorylationreactive oxygen species (ROS)

Identifiers

PMID30300945
PMCPMC6367033
OpenAlexW2897888348

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.