Evidence map›Paper›PMID 30300700›Full record

ArticleJournal of neuroscience methods2019

Simulating human sleep spindle MEG and EEG from ion channel and circuit level dynamics.

B Q Rosen, G P Krishnan, P Sanda, M Komarov, T Sejnowski, N Rulkov, I Ulbert, L Eross, J Madsen, O Devinsky and 5 more

Abstract read
In one paragraph

Article in Journal of neuroscience methods, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
0.3field-weighted citation impact, top 43% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 15 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 8 institutions in 3 countries.

B Q RosenNeurosciences Graduate Program, University of California, San Diego, La Jolla, CA, United States. Electronic address: bqrosen@ucsd.edu.
G P KrishnanDepartment of Medicine, University of California, San Diego, La Jolla, CA, United States. Electronic address: gkrishnan@ucsd.edu.
P SandaDepartment of Medicine, University of California, San Diego, La Jolla, CA, United States; Institute of Computer Science, Czech Academy of Sciences, Prague, Czech Republic. Electronic address: psanda@ucsd.edu.
M KomarovDepartment of Medicine, University of California, San Diego, La Jolla, CA, United States. Electronic address: maxim.a.komarov@gmail.com.
T SejnowskiNeurosciences Graduate Program, University of California, San Diego, La Jolla, CA, United States; The Salk Institute, La Jolla, CA, United States. Electronic address: terry@salk.edu.
N RulkovBioCiruits Institute, University of California, San Diego, La Jolla, CA, United States. Electronic address: nrulkov@ucsd.edu.
I UlbertInstitute of Cognitive Neuroscience and Psychology, Hungarian Academy of Science, Budapest, Hungary; Faculty of Information Technology and Bionics, Peter Pazmany Catholic University, Budapest, Hungary. Electronic address: ulbert.istvan@ttk.mta.hu.
L ErossFaculty of Information Technology and Bionics, Peter Pazmany Catholic University, Budapest, Hungary; Department of Functional Neurosurgery, National Institute of Clinical Neurosciences, Budapest, Hungary. Electronic address: eross@oiti.hu.
J MadsenDepartments of Neurosurgery, Boston Children's Hospital and Harvard Medical School, Boston, MA, United States. Electronic address: joseph.madsen@childrens.harvard.edu.
O DevinskyComprehensive Epilepsy Center, New York University School of Medicine, New York, NY, United States. Electronic address: od4@nyu.edu.
W DoyleComprehensive Epilepsy Center, New York University School of Medicine, New York, NY, United States. Electronic address: wkd1@nyu.edu.
D FaboEpilepsy Centrum, National Institute of Clinical Neurosciences, Budapest, Hungary. Electronic address: dfabo@partners.org.
S CashNeurosciences Graduate Program, University of California, San Diego, La Jolla, CA, United States; Department of Medicine, University of California, San Diego, La Jolla, CA, United States; Departments of Neurology, Massachusetts General Hospital and Harvard Medical School, Boston, MA, United States. Electronic address: scash@mgh.harvard.edu.
M BazhenovNeurosciences Graduate Program, University of California, San Diego, La Jolla, CA, United States; Department of Medicine, University of California, San Diego, La Jolla, CA, United States. Electronic address: bazhenov@salk.edu.
E HalgrenNeurosciences Graduate Program, University of California, San Diego, La Jolla, CA, United States; Department of Radiology, University of California, San Diego, La Jolla, CA, United States; Department of Neurosciences, University of California, San Diego, La Jolla, CA, United States. Electronic address: ehalgren@ucsd.edu.
University of California San Diego · USNew York University · USPázmány Péter Catholic University · HUBoston Children's Hospital · USCzech Academy of Sciences · CZHarvard University · USOrszágos Idegsebészeti Tudományos Intézet · HUSalk Institute for Biological Studies · US

Funding

Neurosciences Graduate Training ProgramT32NS061847 · NINDS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI Brenda L Bloodgood · 2008 to 2026
$7.7M
TRAINING PROGRAM IN COGNITIVE NEUROSCIENCET32MH020002 · NIMH · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI SEJNOWSKI, TERRENCE J · 1999 to 2020
$6.1M
From ion channel dynamics to human EEG and MEG: multiscale neuronal models validated by human dataRF1MH117155 · NIMH · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI BAZHENOV, MAKSIM V, CASH, SYDNEY S · 2018 to 2018
$3.7M
CRCNS: Integrated Empirical and Multiscale Modeling of Human Sleep SpindlesR01EB009282 · NIBIB · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI SEJNOWSKI, TERRENCE J · 2008 to 2016
$3.7M
CRCNS: Multiresolution Modeling of Human Thalamocortical Upstates and DownstatesR01MH099645 · NIMH · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI HALGREN, ERIC · 2012 to 2016
$1.8M
NIBIB NIH HHS R01 EB009282NIMH NIH HHS R01 MH099645NIMH NIH HHS RF1 MH117155NIMH NIH HHS T32 MH020002NINDS NIH HHS T32 NS061847
6 · The paper itself

Abstract

backgroundAlthough they form a unitary phenomenon, the relationship between extracranial M/EEG and transmembrane ion flows is understood only as a general principle rather than as a well-articulated and quantified causal chain.

methodWe present an integrated multiscale model, consisting of a neural simulation of thalamus and cortex during stage N2 sleep and a biophysical model projecting cortical current densities to M/EEG fields. Sleep spindles were generated through the interactions of local and distant network connections and intrinsic currents within thalamocortical circuits. 32,652 cortical neurons were mapped onto the cortical surface reconstructed from subjects' MRI, interconnected based on geodesic distances, and scaled-up to current dipole densities based on laminar recordings in humans. MRIs were used to generate a quasi-static electromagnetic model enabling simulated cortical activity to be projected to the M/EEG sensors.

resultsThe simulated M/EEG spindles were similar in amplitude and topography to empirical examples in the same subjects. Simulated spindles with more core-dominant activity were more MEG weighted. COMPARISON WITH EXISTING

methodsPrevious models lacked either spindle-generating thalamic neural dynamics or whole head biophysical modeling; the framework presented here is the first to simultaneously capture these disparate scales.

conclusionsThis multiscale model provides a platform for the principled quantitative integration of existing information relevant to the generation of sleep spindles, and allows the implications of future findings to be explored. It provides a proof of principle for a methodological framework allowing large-scale integrative brain oscillations to be understood in terms of their underlying channels and synapses.

Indexed as

Cerebral CortexElectroencephalographyMagnetoencephalographyModels, BiologicalSleep StagesThalamusAdolescentAdultComputer SimulationFemaleHumansIon ChannelsMagnetic Resonance ImagingMaleNerve NetYoung AdultIon ChannelsCortexEEGForward modelHumanMEGSleepSpindleThalamus

Identifiers

PMID30300700
PMCPMC6380919
OpenAlexW2951716944

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.