Evidence map›Paper›PMID 30297739›Full record

ArticleNature communications2018

ROS-induced R loops trigger a transcription-coupled but BRCA1/2-independent homologous recombination pathway through CSB.

Yaqun Teng, Tribhuwan Yadav, Meihan Duan, Jun Tan, Yufei Xiang, Boya Gao, Jianquan Xu, Zhuobin Liang, Yang Liu, Satoshi Nakajima and 4 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 124 papers.

0numbers the graph read from it
0cells of the map it votes in
124citing papers in PubMed
6.0field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

124 citing papers in PubMed, 177 citations in OpenAlex.

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64 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 4 institutions in 2 countries.

Yaqun TengSchool of Medicine, Tsinghua University, No.1 Tsinghua Yuan, Haidian District, Beijing, 100084, China.
Tribhuwan YadavMassachusetts General Hospital Cancer Center, Harvard Medical School, Boston, MA, 02129, USA.
Meihan DuanSchool of Medicine, Tsinghua University, No.1 Tsinghua Yuan, Haidian District, Beijing, 100084, China.
Jun TanUPMC Hillman Cancer Center, 5117 Centre Avenue, Pittsburgh, PA, 15213, USA.
Yufei XiangDepartment of Cell Biology, University of Pittsburgh School of Medicine, 3500 Terrace Street, S362 Biomedical Science Tower South, Pittsburgh, PA, 15213, USA.
Boya GaoUPMC Hillman Cancer Center, 5117 Centre Avenue, Pittsburgh, PA, 15213, USA.
Jianquan XuDepartment of Medicine and Bioengineering, University of Pittsburgh, 5117 Centre Ave, Pittsburgh, PA, 15232, USA.
Zhuobin LiangDepartment of Molecular Biology and Biophysics, Yale Medical School, 333 Cedar Street, New Haven, CT, 06520, USA.
Yang LiuDepartment of Medicine and Bioengineering, University of Pittsburgh, 5117 Centre Ave, Pittsburgh, PA, 15232, USA.ORCID http://orcid.org/0000-0002-6388-9674
Satoshi NakajimaDepartment of Microbiology and Molecular Genetics, University of Pittsburgh School of Medicine, 450 Technology Drive, 523 Bridgeside Point II, Pittsburgh, PA, 15219, USA.
Yi ShiDepartment of Cell Biology, University of Pittsburgh School of Medicine, 3500 Terrace Street, S362 Biomedical Science Tower South, Pittsburgh, PA, 15213, USA.
Arthur S LevineDepartment of Microbiology and Molecular Genetics, University of Pittsburgh School of Medicine, 450 Technology Drive, 523 Bridgeside Point II, Pittsburgh, PA, 15219, USA.
Lee ZouMassachusetts General Hospital Cancer Center, Harvard Medical School, Boston, MA, 02129, USA.
Li LanDepartment of Microbiology and Molecular Genetics, University of Pittsburgh School of Medicine, 450 Technology Drive, 523 Bridgeside Point II, Pittsburgh, PA, 15219, USA. llan1@mgh.harvard.edu.
University of Pittsburgh · USHarvard University · USUPMC Hillman Cancer Center · USYale University · US

Funding

VECTOR CORE FACILITYP30CA047904 · NCI · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI Jessie Nedrow · 1988 to 2026
$158.0M
Regulation of the ATR Checkpoint Kinase by DNA DamageR01GM076388 · NIGMS · MASSACHUSETTS GENERAL HOSPITAL · PI ZOU, LEE · 2006 to 2018
$4.3M
Implications of the ATR Checkpoint Kinase in Radiation and Targeted TherapiesR01CA197779 · NCI · MASSACHUSETTS GENERAL HOSPITAL · PI ZOU, LEE · 2015 to 2020
$2.4M
Transcription-Coupled Homologous Recombination upon DNA DamageR01GM118833 · NIGMS · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI LAN, LI · 2016 to 2020
$1.6M
NCI NIH HHS P30 CA047904NCI NIH HHS R01 CA197779NIGMS NIH HHS R01 GM076388NIGMS NIH HHS R01 GM118833U.S. Department of Health & Human Services | National Institutes of Health (NIH) GM118833
6 · The paper itself

Abstract

Actively transcribed regions of the genome are protected by transcription-coupled DNA repair mechanisms, including transcription-coupled homologous recombination (TC-HR). Here we used reactive oxygen species (ROS) to induce and characterize TC-HR at a transcribed locus in human cells. As canonical HR, TC-HR requires RAD51. However, the localization of RAD51 to damage sites during TC-HR does not require BRCA1 and BRCA2, but relies on RAD52 and Cockayne Syndrome Protein B (CSB). During TC-HR, RAD52 is recruited by CSB through an acidic domain. CSB in turn is recruited by R loops, which are strongly induced by ROS in transcribed regions. Notably, CSB displays a strong affinity for DNA:RNA hybrids in vitro, suggesting that it is a sensor of ROS-induced R loops. Thus, TC-HR is triggered by R loops, initiated by CSB, and carried out by the CSB-RAD52-RAD51 axis, establishing a BRCA1/2-independent alternative HR pathway protecting the transcribed genome.

Indexed as

Homologous RecombinationTranscription, GeneticAmino Acid SequenceBase SequenceBRCA1 ProteinBRCA2 ProteinCell Line, TumorDNADNA DamageDNA HelicasesDNA RepairDNA Repair EnzymesHEK293 CellsHumansPoly-ADP-Ribose Binding ProteinsRad51 RecombinaseBRCA1 ProteinBRCA1 protein, humanBRCA2 ProteinBRCA2 protein, humanDNADNA HelicasesDNA Repair EnzymesERCC6 protein, humanPoly-ADP-Ribose Binding ProteinsRad51 RecombinaseRad52 DNA Repair and Recombination ProteinRAD52 protein, humanReactive Oxygen Species

Identifiers

PMID30297739
PMCPMC6175878
OpenAlexW2895074278

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.