Evidence map›Paper›PMID 30297413›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2018

Entropic contribution to enhanced thermal stability in the thermostable P450 CYP119.

Zhuo Liu, Sara Lemmonds, Juan Huang, Madhusudan Tyagi, Liang Hong, Nitin Jain

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
6.8field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 69 citations in OpenAlex.

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  17. Locking out water at 100°C.Biophysical journal · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 2 countries.

Zhuo LiuSchool of Physics and Astronomy, Shanghai Jiao Tong University, 200240 Shanghai, People's Republic of China.ORCID 0000-0001-9202-0516
Sara LemmondsDepartment of Biochemistry and Cellular and Molecular Biology, University of Tennessee, Knoxville, TN 37996.
Juan HuangState Key Laboratory of Microbial Metabolism, Shanghai Jiao Tong University, 200240 Shanghai, People's Republic of China.
Madhusudan TyagiCenter for Neutron Research, National Institute of Standards and Technology, Gaithersburg, MD 20899.
Liang HongSchool of Physics and Astronomy, Shanghai Jiao Tong University, 200240 Shanghai, People's Republic of China; njain@utk.edu hongl3liang@sjtu.cn.
Nitin JainDepartment of Biochemistry and Cellular and Molecular Biology, University of Tennessee, Knoxville, TN 37996; njain@utk.edu hongl3liang@sjtu.cn.
Shanghai Jiao Tong University · CNUniversity of Tennessee at Knoxville · USNational Institute of Standards and Technology · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The enhanced thermostability of thermophilic proteins with respect to their mesophilic counterparts is often attributed to the enthalpy effect, arising from strong interactions between protein residues. Intuitively, these strong interresidue interactions will rigidify the biomolecules. However, the present work utilizing neutron scattering and solution NMR spectroscopy measurements demonstrates a contrary example that the thermophilic cytochrome P450, CYP119, is much more flexible than its mesophilic counterpart, CYP101A1, something which is not apparent just from structural comparison of the two proteins. A mechanism to explain this apparent contradiction is that higher flexibility in the folded state of CYP119 increases its conformational entropy and thereby reduces the entropy gain during denaturation, which will increase the free energy needed for unfolding and thus stabilize the protein. This scenario is supported by thermodynamic data on the temperature dependence of unfolding free energy, which shows a significant entropic contribution to the thermostability of CYP119 and lends an added dimension to enhanced stability, previously attributed only to presence of aromatic stacking interactions and salt bridge networks. Our experimental data also support the notion that highly thermophilic P450s such as CYP119 may use a mechanism that partitions flexibility differently from mesophilic P450s between ligand binding and thermal stability.

Indexed as

Archaeal ProteinsCytochrome P-450 Enzyme SystemEntropyMagnetic Resonance SpectroscopyProtein DenaturationSulfolobus acidocaldariusTemperatureThermodynamicsArchaeal ProteinsCYP119 protein, Sulfolobus solfataricusCytochrome P-450 Enzyme Systemcytochrome p450entropy-drivenflexibilitythermophilic proteinthermostability

Identifiers

PMID30297413
PMCPMC6205451
OpenAlexW2896880601

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.