Evidence map›Paper›PMID 30297366›Full record

ArticleAntimicrobial agents and chemotherapy2018

Competitive Fitness of Essential Gene Knockdowns Reveals a Broad-Spectrum Antibacterial Inhibitor of the Cell Division Protein FtsZ.

Andrew M Hogan, Viola C Scoffone, Vadim Makarov, April S Gislason, Haben Tesfu, Maria S Stietz, Ann Karen C Brassinga, Michael Domaratzki, Xuan Li, Alberto Azzalin and 7 more

Open access · hybridAbstract read
In one paragraph

Article in Antimicrobial agents and chemotherapy, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
1.3field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 40 citations in OpenAlex.

  1. Review
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  13. Machine Learning Models forMolecular pharmaceutics · 2022
    Article
  14. Article
  15. Methodological tools to study species of the genus Burkholderia.Applied microbiology and biotechnology · 2021
    Review
  16. Article
  17. Antistaphylococcal Activity of the FtsZ Inhibitor C109.Pathogens (Basel, Switzerland) · 2021
    Article
  18. Review
  19. Molecular Characterization of theAntibiotics (Basel, Switzerland) · 2020
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 4 institutions in 4 countries.

Andrew M HoganDepartment of Microbiology, University of Manitoba, Winnipeg, Manitoba, Canada.
Viola C ScoffoneDepartment of Biology and Biotechnology, University of Pavia, Pavia, Italy.
Vadim MakarovFederal Research Center Fundamentals of Biotechnology of the Russian Academy of Sciences, Moscow, Russia.
April S GislasonDepartment of Microbiology, University of Manitoba, Winnipeg, Manitoba, Canada.
Haben TesfuDepartment of Microbiology, University of Manitoba, Winnipeg, Manitoba, Canada.
Maria S StietzDepartment of Microbiology, University of Manitoba, Winnipeg, Manitoba, Canada.
Ann Karen C BrassingaDepartment of Microbiology, University of Manitoba, Winnipeg, Manitoba, Canada.
Michael DomaratzkiDepartment of Computer Science, University of Manitoba, Winnipeg, Manitoba, Canada.
Xuan LiDepartment of Mathematics and Statistics, University of Minnesota-Duluth, Duluth, Minnesota, USA.
Alberto AzzalinDepartment of Biology and Biotechnology, University of Pavia, Pavia, Italy.
Marco BiggiogeraDepartment of Biology and Biotechnology, University of Pavia, Pavia, Italy.
Olga RiabovaFederal Research Center Fundamentals of Biotechnology of the Russian Academy of Sciences, Moscow, Russia.
Natalia MonakhovaFederal Research Center Fundamentals of Biotechnology of the Russian Academy of Sciences, Moscow, Russia.
Laurent R ChiarelliDepartment of Biology and Biotechnology, University of Pavia, Pavia, Italy.ORCID 0000-0003-0348-9764
Giovanna RiccardiDepartment of Biology and Biotechnology, University of Pavia, Pavia, Italy.
Silvia BuroniDepartment of Biology and Biotechnology, University of Pavia, Pavia, Italy silvia.buroni@unipv.it silvia.cardona@umanitoba.ca.
Silvia T CardonaDepartment of Microbiology, University of Manitoba, Winnipeg, Manitoba, Canada silvia.buroni@unipv.it silvia.cardona@umanitoba.ca.ORCID 0000-0002-0629-8886
University of Manitoba · CAUniversity of Pavia · ITRussian Academy of Sciences · RUUniversity of Minnesota, Duluth · US

Funding

CIHR
6 · The paper itself

Abstract

To streamline the elucidation of antibacterial compounds' mechanism of action, comprehensive high-throughput assays interrogating multiple putative targets are necessary. However, current chemogenomic approaches for antibiotic target identification have not fully utilized the multiplexing potential of next-generation sequencing. Here, we used Illumina sequencing of transposon insertions to track the competitive fitness of a

Indexed as

AnimalsAnti-Bacterial AgentsBacterial ProteinsBurkholderia cenocepaciaBurkholderia InfectionsCaenorhabditis elegansCystic FibrosisCytoskeletal ProteinsDrug Evaluation, PreclinicalGene Knockdown TechniquesGenes, EssentialGreen Fluorescent ProteinsHigh-Throughput Nucleotide SequencingHumansMicrobial Sensitivity TestsMutationAnti-Bacterial AgentsBacterial ProteinsCytoskeletal ProteinsFtsZ protein, BacteriaGreen Fluorescent ProteinsBurkholderiadrug targetsessential genesfluorescent image analysisFtsZmechanisms of actionTn-seq

Identifiers

PMID30297366
PMCPMC6256756
OpenAlexW2895501562

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.