ArticleJournal of structural biology2018
Using Scipion for stream image processing at Cryo-EM facilities.
Article in Journal of structural biology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.
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The trial behind it
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Who cites it
21 citing papers in PubMed.
- An unattended image-processing pipeline for on-the-fly quality assessment and 3D exploration in cryo-EM.Acta crystallographica. Section D, Structural biology · 2026Article
- MISO: microfluidic protein isolation enables single-particle cryo-EM structure determination from a single cell colony.Nature methods · 2025Article
- Article
- Current and future perspectives for structural biology at the Grenoble EPN campus: a comprehensive overview.Journal of synchrotron radiation · 2025Review
- EMinsight: a tool to capture cryoEM microscope configuration and experimental outcomes for analysis and deposition.Acta crystallographica. Section D, Structural biology · 2024Article
- Automated model building and protein identification in cryo-EM maps.bioRxiv : the preprint server for biology · 2023Article
- Overview of Membrane Protein Sample Preparation for Single-Particle Cryo-Electron Microscopy Analysis.International journal of molecular sciences · 2023Review
- Article
- CryoEM structural exploration of catalytically active enzyme pyruvate carboxylase.Nature communications · 2022Article
- Modulating co-translational protein folding by rational design and ribosome engineering.Nature communications · 2022Article
- Article
- High-resolution structures of malaria parasite actomyosin and actin filaments.PLoS pathogens · 2022Article
- Article
- New tools for automated cryo-EM single-particle analysis in RELION-4.0.The Biochemical journal · 2021Article
- From Tube to Structure: SPA Cryo-EM Workflow Using Apoferritin as an Example.Methods in molecular biology (Clifton, N.J.) · 2021Article
- Single-Particle Cryo-EM of Membrane Proteins.Methods in molecular biology (Clifton, N.J.) · 2021Article
- CryoEM structure ofLife science alliance · 2020Article
- Industrial cryo-EM facility setup and management.Acta crystallographica. Section D, Structural biology · 2020Article
- SIMPLE 3.0. Stream single-particle cryo-EM analysis in real time.Journal of structural biology: X · 2020Article
- Flexible workflows for on-the-fly electron-microscopy single-particle image processing using Scipion.Acta crystallographica. Section D, Structural biology · 2019Article
Corrections and comments
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Authors and funding
25 authors.
Funding
Abstract
Three dimensional electron microscopy is becoming a very data-intensive field in which vast amounts of experimental images are acquired at high speed. To manage such large-scale projects, we had previously developed a modular workflow system called Scipion (de la Rosa-Trevín et al., 2016). We present here a major extension of Scipion that allows processing of EM images while the data is being acquired. This approach helps to detect problems at early stages, saves computing time and provides users with a detailed evaluation of the data quality before the acquisition is finished. At present, Scipion has been deployed and is in production mode in seven Cryo-EM facilities throughout the world.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.