Evidence map›Paper›PMID 30296272›Full record

ArticlePloS one2018

Reference genes selection for quantitative gene expression studies in tea green leafhoppers, Empoasca onukii Matsuda.

Yongchen Yu, Jin Zhang, Chen Huang, Xiangjie Hou, Xiaoling Sun, Bin Xiao

Open access · goldAbstract readValidation Study
In one paragraph

Article in PloS one, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.6field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 15 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Yongchen YuTea Research Institute, Chinese Academy of Agricultural Sciences, Hangzhou, Zhejiang, China.ORCID 0000-0002-2310-6022
Jin ZhangTea Research Institute, Chinese Academy of Agricultural Sciences, Hangzhou, Zhejiang, China.
Chen HuangTea Research Institute, Chinese Academy of Agricultural Sciences, Hangzhou, Zhejiang, China.
Xiangjie HouTea Research Institute, Chinese Academy of Agricultural Sciences, Hangzhou, Zhejiang, China.
Xiaoling SunTea Research Institute, Chinese Academy of Agricultural Sciences, Hangzhou, Zhejiang, China.ORCID 0000-0001-7677-2718
Bin XiaoCollege of Horticulture, Northwest A&F University, Yangling, Shaanxi, China.
Chinese Academy of Agricultural Sciences · CNNorthwest A&F University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Empoasca onukii Matsuda is one of the most devastating pests of the tea plant (Camellia sinensis). Still, the presumed expression stability of its reference genes (RGs) has not been analyzed. RGs are essential for accurate and reliable gene expression analysis, so this absence has hampered the study of the insect's molecular biology. To find candidate RGs for normalizing gene expression data, we cloned ten common housekeeping genes from E. onukii. Using the ΔCt method, geNorm, NormFinder and BestKeeper, we screened the RGs that were appropriate for quantifying the mRNA transcription of cellular responses under five experimental conditions. We identified the combinations of α-TUB and G6PDH, α-TUB and UBC, two RGs (α-TUB and β-TUB1) or three RGs (α-TUB, RPL13 and GAPDH), AK and UBC, or RPL13 and α-TUB as the best for analyzing gene expression in E. onukii adults of both sexes in different tissues, nymphs at different developmental stages, nymphs exposed to different temperatures or nymphs exposed to photoperiod stress. Finally, the E. onukii cysteine proteinase (Eocyp) was chosen as the target gene to validate the rationality of the proposed RGs. In conclusion, our study suggests a series of RGs with which to study the gene expression profiles of E. onukii that have been manipulated (biotically or abiotically) using reverse transcription quantitative polymerase chain reaction. The results offer a solid foundation for further studies of the molecular biology of E. onukii.

Indexed as

Polymerase Chain ReactionAnimalsFemaleGene ExpressionGene Expression ProfilingGene Expression RegulationHemipteraInsect ProteinsMalePhotoperiodRNA, MessengerStress, PhysiologicalTeaTemperatureInsect ProteinsRNA, MessengerTea

Identifiers

PMID30296272
PMCPMC6175517
OpenAlexW2896657813

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.