Evidence map›Paper›PMID 30296201›Full record

ArticlePlant signaling & behavior2018

PHYTOCHROME INTERACTING FACTOR1 interactions leading to the completion or prolongation of seed germination.

Lynnette M A Dirk, Santosh Kumar, Manoj Majee, A Bruce Downie

Open access · bronzeAbstract read
In one paragraph

Article in Plant signaling & behavior, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
1.0field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 13 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Comprehensive Analysis ofInternational journal of molecular sciences · 2022
    Article
  5. Gas-Plasma-Activated Water Impact on Photo-Dependent Dormancy Mechanisms inInternational journal of molecular sciences · 2022
    Article
  6. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 2 countries.

Lynnette M A Dirka Department of Horticulture, Seed Biology Group , University of Kentucky , Lexington , KY , USA.ORCID 0000-0002-7564-5095
Santosh Kumarb Department of Biochemistry, 243 Christopher S. Bond Life Sciences Center , University of Missouri , Columbia , MO , USA.ORCID 0000-0002-6605-6686
Manoj Majeec National Institute of Plant Genome Research , New Delhi , India.ORCID 0000-0002-9156-2951
A Bruce Downiea Department of Horticulture, Seed Biology Group , University of Kentucky , Lexington , KY , USA.ORCID 0000-0001-6680-0551
University of Kentucky · USNational Institute of Plant Genome Research · INUniversity of Missouri · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In Arabidopsis thaliana, the basic Helix Loop Helix transcription factor, PHYTOCHROME INTERACTING FACTOR1 (PIF1) is known to orchestrate the seed transcriptome such that, ultimately, proteins repressing the completion of germination are produced in darkness. While PIF1-mediated control of abscisic acid (ABA) and gibberellic acid (GA) anabolism/catabolism is indirect, PIF1 action favors ABA while discriminating against GA, firmly establishing ABA's repressive influence on the completion of germination. The result is tissue that is more sensitive to and producing more ABA; and is less responsive to and deficient in GA. Illumination of the appropriate wavelength activates phytochrome which enters the nucleus, and binds to PIF1, initiating PIF1's phosphorylation by diverse kinases, subsequent polyubiquitination, and hydrolysis. One mechanism by which phosphorylated PIF1 is eliminated from the cells of the seed upon illumination involves an F-BOX protein, COLD TEMPERATURE GERMINATING10 (CTG10). Discovered in an unbiased screen of activation tagged lines hastening the completion of seed germination at 10°C, one indirect consequence of CTG10 action in reducing PIF1 titer, should be to enhance the transcription of genes whose products work to increase bioactive GA titer, shifting the intracellular milieu from one that is repressive to, toward one conducive to, the completion of seed germination. We have tested this hypothesis using a variety of Arabidopsis lines altered in CTG10 amounts. Here we demonstrate using bimolecular fluorescence complementation that PIF1 interacts with CTG10 and show that, in light exposed seeds, PIF1 is more persistent in ctg10 relative to WT seeds while it is less stable in seeds over-expressing CTG10. These results are congruent with the relative transcript abundance from three genes whose products are involved in bioactive GA accumulation. We put forth a model of how PIF1 interactions in imbibed seeds change during germination and how a permissive light signal influences these changes, leading to the completion of germination of these positively photoblastic propagules.

Indexed as

Abscisic AcidArabidopsisArabidopsis ProteinsGene Expression Regulation, PlantGerminationGibberellinsIntracellular Signaling Peptides and ProteinsLightMembrane ProteinsPhosphoproteinsSeedsAbscisic AcidArabidopsis Proteinsgibberellic acidGibberellinsIntracellular Signaling Peptides and ProteinsMembrane ProteinsPhosphoproteinsPKS1 protein, ArabidopsisCTG10germinationlightPIF1Seed

Identifiers

PMID30296201
PMCPMC6204810
OpenAlexW2895996337

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.