Evidence map›Paper›PMID 30295719›Full record

ArticleDatabase : the journal of biological databases and curation2018

Tripal Developer Toolkit.

Bradford Condon, Abdullah Almsaeed, Ming Chen, Joe West, Margaret Staton

Abstract read
In one paragraph

Article in Database : the journal of biological databases and curation, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. A PostgreSQL Tripal solution for large-scale genotypic and phenotypic data.Database : the journal of biological databases and curation · 2021
    Article
  3. Article
  4. Tripal v3: an ontology-based toolkit for construction of FAIR biological community databases.Database : the journal of biological databases and curation · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Bradford CondonDepartment of Entomology and Plant Pathology, University of Tennessee Institute of Agriculture, E.J. Chapman Blvd, 370 Plant Biotechnology Building, Knoxville, TN.
Abdullah AlmsaeedDepartment of Entomology and Plant Pathology, University of Tennessee Institute of Agriculture, E.J. Chapman Blvd, 370 Plant Biotechnology Building, Knoxville, TN.
Ming ChenDepartment of Entomology and Plant Pathology, University of Tennessee Institute of Agriculture, E.J. Chapman Blvd, 370 Plant Biotechnology Building, Knoxville, TN.
Joe WestDepartment of Entomology and Plant Pathology, University of Tennessee Institute of Agriculture, E.J. Chapman Blvd, 370 Plant Biotechnology Building, Knoxville, TN.
Margaret StatonDepartment of Entomology and Plant Pathology, University of Tennessee Institute of Agriculture, E.J. Chapman Blvd, 370 Plant Biotechnology Building, Knoxville, TN.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Tripal community database construction toolkit utilizing the content management system Drupal. Tripal is used to make biological, genetic and genomic data more discoverable, shareable, searchable and standardized. As funding for community-level genomics databases declines, Tripal's open-source codebase provides a means for sites to be built and maintained with a minimal investment in staff and new development. Tripal is ultimately as strong as the community of sites and developers that use it. We present a set of developer tools that will make building and maintaining Tripal 3 sites easier for new and returning users. These tools break down barriers to entry such as setting up developer and testing environments, acquiring and loading test datasets, working with controlled vocabulary terms and writing new Drupal classes.

Indexed as

Databases, GeneticSoftwareHumansVocabulary

Identifiers

PMID30295719
PMCPMC6147213

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.