Evidence map›Paper›PMID 30293761›Full record

ArticleVaccine2018

The diversity of the proline-rich domain of pneumococcal surface protein A (PspA): Potential relevance to a broad-spectrum vaccine.

Reshmi Mukerji, Curtis Hendrickson, Kristopher R Genschmer, Sang-Sang Park, Valérie Bouchet, Richard Goldstein, Elliot J Lefkowitz, David E Briles

Open access · hybridAbstract read
In one paragraph

Article in Vaccine, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
1.9field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 33 citations in OpenAlex.

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  9. A new candidate epitope-based vaccine against PspA PhtD ofFrontiers in cellular and infection microbiology · 2023
    Article
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  18. An in vivo atlas of host-pathogen transcriptomes duringProceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  19. Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Reshmi MukerjiDepartment of Microbiology, University of Alabama at Birmingham, United States.
Curtis HendricksonCenter for Clinical and Translational Sciences, University of Alabama at Birmingham, United States.
Kristopher R GenschmerDepartment of Microbiology, University of Alabama at Birmingham, United States; Department of Medicine, Division of Pulmonary, Allergy and Critical Care, United States.
Sang-Sang ParkDepartment of Microbiology, University of Alabama at Birmingham, United States.
Valérie BouchetSection of Molecular Genetics, Maxwell Finland Laboratory for Infectious Diseases, Division of Pediatric Infectious Diseases, Boston University Medical Center, Boston, MA 02118, United States.
Richard GoldsteinSection of Molecular Genetics, Maxwell Finland Laboratory for Infectious Diseases, Division of Pediatric Infectious Diseases, Boston University Medical Center, Boston, MA 02118, United States.
Elliot J LefkowitzDepartment of Microbiology, University of Alabama at Birmingham, United States; Center for Clinical and Translational Sciences, University of Alabama at Birmingham, United States.
David E BrilesDepartment of Microbiology, University of Alabama at Birmingham, United States. Electronic address: dbriles@uab.edu.
University of Alabama at Birmingham · USBoston Medical Center · USUniversity Medical Center · US

Funding

UAB Center for Clinical and Translational Science (CCTS)UL1TR001417 · NCATS · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI KIMBERLY, ROBERT P. · 2015 to 2018
$31.4M
Vaccine potential of the proline-rich domain of pneumococcal surface protein AR01AI118805 · NIAID · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI BRILES, DAVID E · 2015 to 2019
$1.8M
Recombination-quiescent genes & phylogenic validation of encoded vaccine targetsR21AI081687 · NIAID · BOSTON MEDICAL CENTER · PI GOLDSTEIN, RICHARD · 2010 to 2011
$463k
NCATS NIH HHS UL1 TR001417NIAID NIH HHS R01 AI118805NIAID NIH HHS R21 AI081687
6 · The paper itself

Abstract

Pneumococcal surface protein A (PspA) is a surface exposed, highly immunogenic protein of Streptococcus pneumoniae. Its N-terminal α-helical domain (αHD) elicits protective antibody in humans and animals that can protect mice from fatal infections with pneumococci and can be detected in vitro with opsonophagocytosis assays. The proline-rich domain (PRD) in the center of the PspA sequence can also elicit protection. This study revealed that although the sequence of PRD was diverse, PRD from different pneumococcal isolates contained many shared elements. The inferred amino acid sequences of 123 such PRDs, which were analyzed by assembly and alignment-free (AAF) approaches, formed three PRD groups. Of these sequences, 45 were classified as Group 1, 19 were classified as Group 2, and 59 were classified as Group 3. All Group 3 sequences contained a highly conserved 22-amino acid non-proline block (NPB). A significant polymorphism was observed, however, at a single amino acid position within NPB. Each of the three PRD groups had characteristic patterns of short amino acid repeats, with most of the repeats being found in more than one PRD group. One of these repeats, PKPEQP as well as the NPB were previously shown to elicit protective antibodies in mice. In this study, we found that sera from 12 healthy human adult volunteers contained antibodies to all three PRD groups. This suggested that a PspA-containing vaccine containing carefully selected PRDs and αHDs could redundantly cover the known diversity of PspA. Such an approach might reduce the chances of PspA variants escaping a PspA vaccine's immunity.

Indexed as

AdultAntibodies, BacterialBacterial ProteinsHumansPhylogenyPneumococcal VaccinesProtein DomainsAntibodies, BacterialBacterial Proteinspneumococcal surface protein APneumococcal VaccinesNon-proline block (NPB)Pneumococcal surface protein A (PspA)Proline rich domain (PRD)S. pneumoniaeVaccine

Identifiers

PMID30293761
PMCPMC6366627
OpenAlexW2895650501

What OpenQuestion holds

Textmetadata
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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.