Evidence map›Paper›PMID 30293127›Full record

ArticleTransgenic research2018

Coexpression of octopine and succinamopine Agrobacterium virulence genes to generate high quality transgenic events in maize by reducing vector backbone integration.

Nagesh Sardesai, Stephen Foulk, Wei Chen, Huixia Wu, Emily Etchison, Manju Gupta

Abstract read
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In one paragraph

Article in Transgenic research, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Efficient CRISPR-mediated base editing inProceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  2. Review
  3. Biodesign research · 2020
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Nagesh SardesaiDow AgroSciences LLC, 9330 Zionsville Rd, Indianapolis, IN, USA. nsardesai@dow.com.ORCID 0000-0002-3843-1098
Stephen FoulkDow AgroSciences LLC, 9330 Zionsville Rd, Indianapolis, IN, USA.
Wei ChenDow AgroSciences LLC, 9330 Zionsville Rd, Indianapolis, IN, USA.
Huixia WuDow AgroSciences LLC, 9330 Zionsville Rd, Indianapolis, IN, USA.
Emily EtchisonDow AgroSciences LLC, 9330 Zionsville Rd, Indianapolis, IN, USA.
Manju GuptaDow AgroSciences LLC, 9330 Zionsville Rd, Indianapolis, IN, USA.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Agrobacterium-mediated transformation is a complex process that is widely utilized for generating transgenic plants. However, one of the major concerns of this process is the frequent presence of undesirable T-DNA vector backbone sequences in the transgenic plants. To mitigate this deficiency, a ternary strain of A. tumefaciens was modified to increase the precision of T-DNA border nicking such that the backbone transfer is minimized. This particular strain supplemented the native succinamopine VirD1/VirD2 of EHA105 with VirD1/VirD2 derived from an octopine source (pTi15955), the same source as the binary T-DNA borders tested here, residing on a ternary helper plasmid containing an extra copy of the succinamopine VirB/C/G operons and VirD1. Transformation of maize immature embryos was carried out with two different test constructs, pDAB101556 and pDAB111437, bearing the reporter YFP gene and insecticidal toxin Cry1Fa gene, respectively, contained in the VirD-supplemented and regular control ternary strains. Molecular analyses of ~ 700 transgenic events revealed a significant 2.6-fold decrease in events containing vector backbone sequences, from 35.7% with the control to 13.9% with the VirD-supplemented strain for pDAB101556 and from 24.9% with the control to 9.3% with the VirD-supplemented strain for pDAB111437, without compromising transformation efficiency. In addition, while the number of single copy events recovered was similar, there was a 24-26% increase in backbone-free events with the VirD-supplemented strain compared to the control strain. Thus, supplementing existing VirD1/VirD2 genes in Agrobacterium, to recognize diverse T-DNA borders, proved to be a useful tool to increase the number of high quality events in maize.

Indexed as

Agrobacterium tumefaciensAmino AcidsArginineBacterial ProteinsDNA, BacterialPlants, Genetically ModifiedTransformation, GeneticVirulenceVirulence FactorsZea maysAmino AcidsArginineBacterial ProteinsDNA, BacterialoctopinesuccinamopineVirulence FactorsAgrobacterium-mediated transformationEHA105Octopine virulence genesT-DNA bordersVirD1VirD2

Identifiers

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.