Evidence map›Paper›PMID 30291474›Full record

ArticleMedical microbiology and immunology2019

Macaca arctoides gammaherpesvirus 1 (strain herpesvirus Macaca arctoides): virus sequence, phylogeny and characterisation of virus-transformed macaque and rabbit cell lines.

Andi Krumbholz, Janine Roempke, Thomas Liehr, Marco Groth, Astrid Meerbach, Michael Schacke, Gregor Maschkowitz, Helmut Fickenscher, Wolfram Klapper, Andreas Sauerbrei and 2 more

Abstract read
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In one paragraph

Article in Medical microbiology and immunology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact, top 85% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 4 citations in OpenAlex.

  1. Review
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 3 institutions in 1 country.

Andi KrumbholzInstitute of Infection Medicine, University of Kiel and University Medical Center Schleswig-Holstein, Brunswiker Strasse 4, 24105, Kiel, Germany. krumbholz@infmed.uni-kiel.de.
Janine RoempkeInstitute of Infection Medicine, University of Kiel and University Medical Center Schleswig-Holstein, Brunswiker Strasse 4, 24105, Kiel, Germany.
Thomas LiehrInstitute of Human Genetics, Jena University Hospital, Friedrich Schiller University, Jena, Germany.
Marco GrothCF DNA sequencing, Leibniz Institute on Aging-Fritz Lipmann Institute (FLI), Jena, Germany.
Astrid MeerbachDivision of Experimental Virology, Institute of Medical Microbiology, Jena University Hospital, Friedrich Schiller University, Jena, Germany.
Michael SchackeDivision of Experimental Virology, Institute of Medical Microbiology, Jena University Hospital, Friedrich Schiller University, Jena, Germany.
Gregor MaschkowitzInstitute of Infection Medicine, University of Kiel and University Medical Center Schleswig-Holstein, Brunswiker Strasse 4, 24105, Kiel, Germany.
Helmut FickenscherInstitute of Infection Medicine, University of Kiel and University Medical Center Schleswig-Holstein, Brunswiker Strasse 4, 24105, Kiel, Germany.
Wolfram KlapperDepartment of Pathology, Hematopathology Section and Lymph Node Registry, University of Kiel and University Medical Center Schleswig-Holstein, Kiel, Germany.
Andreas SauerbreiDivision of Experimental Virology, Institute of Medical Microbiology, Jena University Hospital, Friedrich Schiller University, Jena, Germany.
Peter WutzlerDivision of Experimental Virology, Institute of Medical Microbiology, Jena University Hospital, Friedrich Schiller University, Jena, Germany.
Roland ZellDivision of Experimental Virology, Institute of Medical Microbiology, Jena University Hospital, Friedrich Schiller University, Jena, Germany.
Friedrich Schiller University Jena · DEJena University Hospital · DELeibniz Institute on Aging - Fritz Lipmann Institute (FLI) · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Herpesvirus Macaca arctoides (HVMA) has the propensity to transform macaque lymphocytes to lymphoblastoid cells (MAL-1). Inoculation of rabbits with cell-free virus-containing supernatant resulted in the development of malignant lymphomas and allowed isolation of immortalised HVMA-transformed rabbit lymphocytes (HTRL). In this study, the HVMA genome sequence (approx. 167 kbp), its organisation, and novel aspects of virus latency are presented. Ninety-one open reading frames were identified, of which 86 were non-repetitive. HVMA was identified as a Lymphocryptovirus closely related to Epstein-Barr virus, suggesting the designation as 'Macaca arctoides gammaherpesvirus 1' (MarcGHV-1). In situ lysis gel and Southern blot hybridisation experiments revealed that the MAL-1 cell line contains episomal and linear DNA, whereas episomal DNA is predominantly present in HTRL. Integration of viral DNA into macaque and rabbit host cell genomes was demonstrated by fluorescence in situ hybridisation on chromosomal preparations. Analysis of next-generation sequencing data confirmed this finding. Approximately 400 read pairs represent the overlap between macaque and MarcGHV-1 DNA. Both, MAL-1 cells and HTRL show characteristics of a polyclonal tumour with B- and T-lymphocyte markers. Based on analysis of viral gene expression and immunohistochemistry, the persistence of MarcGHV-1 in MAL-1 cells resemble the latency type III, whereas the expression pattern observed in HTRL was more comparable with latency type II. There was no evidence of the presence of STLV-1 proviral DNA in MAL-1 and HTRL. Due to the similarity to EBV-mediated cell transformation, MarcGHV-1 expands the available in vitro models by simian and rabbit cell lines.

Indexed as

Cell Transformation, ViralGenome, ViralMacacaPhylogenySequence Analysis, DNAAnimalsCell LineGammaherpesvirinaeGene OrderGenes, ViralHerpesviridae InfectionsLymphocytesLymphomaOpen Reading FramesRabbitsVirus LatencyGenome sequenceLymphocryptovirusLymphocytesOld World monkeyTumour

Identifiers

PMID30291474
OpenAlexW2895153775

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.