Evidence map›Paper›PMID 30291245›Full record

ArticleNature communications2018

Suppressor mutations in Rpf2-Rrs1 or Rpl5 bypass the Cgr1 function for pre-ribosomal 5S RNP-rotation.

Matthias Thoms, Valentin Mitterer, Lukas Kater, Laurent Falquet, Roland Beckmann, Dieter Kressler, Ed Hurt

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
0.8field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 27 citations in OpenAlex.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 2 countries.

Matthias ThomsBiochemistry Centre, University of Heidelberg, Heidelberg, 69120, Germany. matthias.thoms@bzh.uni-heidelberg.de.ORCID http://orcid.org/0000-0001-8084-6097
Valentin MittererBiochemistry Centre, University of Heidelberg, Heidelberg, 69120, Germany.
Lukas KaterGene Center, University of Munich, Munich, 81377, Germany.
Laurent FalquetUniversity of Fribourg and Swiss Institute of Bioinformatics, Fribourg, 1700, Switzerland.
Roland BeckmannGene Center, University of Munich, Munich, 81377, Germany.ORCID http://orcid.org/0000-0003-4291-3898
Dieter KresslerUniversity of Fribourg and Swiss Institute of Bioinformatics, Fribourg, 1700, Switzerland.ORCID http://orcid.org/0000-0003-4855-3563
Ed HurtBiochemistry Centre, University of Heidelberg, Heidelberg, 69120, Germany. ed.hurt@bzh.uni-heidelberg.de.ORCID http://orcid.org/0000-0002-4535-8255
Heidelberg University · DESIB Swiss Institute of Bioinformatics · CH

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

During eukaryotic 60S biogenesis, the 5S RNP requires a large rotational movement to achieve its mature position. Cryo-EM of the Rix1-Rea1 pre-60S particle has revealed the post-rotation stage, in which a gently undulating α-helix corresponding to Cgr1 becomes wedged between Rsa4 and the relocated 5S RNP, but the purpose of this insertion was unknown. Here, we show that cgr1 deletion in yeast causes a slow-growth phenotype and reversion of the pre-60S particle to the pre-rotation stage. However, spontaneous extragenic suppressors could be isolated, which restore growth and pre-60S biogenesis in the absence of Cgr1. Whole-genome sequencing reveals that the suppressor mutations map in the Rpf2-Rrs1 module and Rpl5, which together stabilize the unrotated stage of the 5S RNP. Thus, mutations in factors stabilizing the pre-rotation stage facilitate 5S RNP relocation upon deletion of Cgr1, but Cgr1 itself could stabilize the post-rotation stage.

Indexed as

Amino Acid SequenceNuclear ProteinsRibosomal ProteinsRNA-Binding ProteinsRNA, Ribosomal, 5SSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsSuppression, GeneticCGR1 protein, S cerevisiaeNuclear ProteinsRibosomal ProteinsRNA-Binding ProteinsRNA, Ribosomal, 5SRPF2 protein, S cerevisiaeRPL5 protein, S cerevisiaeRRS1 protein, S cerevisiaeSaccharomyces cerevisiae Proteins

Identifiers

PMID30291245
PMCPMC6173701
OpenAlexW2895261801

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.