Evidence map›Paper›PMID 30290178›Full record

ArticleCell stem cell2018

Stage-Specific Transcription Factors Drive Astrogliogenesis by Remodeling Gene Regulatory Landscapes.

Neha Tiwari, Abhijeet Pataskar, Sophie Péron, Sudhir Thakurela, Sanjeeb Kumar Sahu, María Figueres-Oñate, Nicolás Marichal, Laura López-Mascaraque, Vijay K Tiwari, Benedikt Berninger

Abstract read
In one paragraph

Article in Cell stem cell, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 69 papers.

0numbers the graph read from it
0cells of the map it votes in
69citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

69 citing papers in PubMed.

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9 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Neha TiwariInstitute of Physiological Chemistry, University Medical Center Johannes Gutenberg University Mainz, 55128 Mainz, Germany.
Abhijeet PataskarInstitute of Molecular Biology (IMB), 55128 Mainz, Germany.
Sophie PéronInstitute of Physiological Chemistry, University Medical Center Johannes Gutenberg University Mainz, 55128 Mainz, Germany.
Sudhir ThakurelaInstitute of Molecular Biology (IMB), 55128 Mainz, Germany; Broad Institute of MIT and Harvard, Cambridge, MA, USA; Department of Stem Cell and Regenerative Biology, Harvard University, Cambridge, MA, USA.
Sanjeeb Kumar SahuInstitute of Molecular Biology (IMB), 55128 Mainz, Germany.
María Figueres-OñateInstituto Cajal, CSIC, Madrid, Spain.
Nicolás MarichalInstitute of Physiological Chemistry, University Medical Center Johannes Gutenberg University Mainz, 55128 Mainz, Germany.
Laura López-MascaraqueInstituto Cajal, CSIC, Madrid, Spain.
Vijay K TiwariInstitute of Molecular Biology (IMB), 55128 Mainz, Germany; Focus Program Translational Neuroscience, Johannes Gutenberg University Mainz, 55131 Mainz, Germany. Electronic address: vijay.tiwari@yahoo.com.
Benedikt BerningerInstitute of Physiological Chemistry, University Medical Center Johannes Gutenberg University Mainz, 55128 Mainz, Germany; Focus Program Translational Neuroscience, Johannes Gutenberg University Mainz, 55131 Mainz, Germany; Centre for Developmental Neurobiology, Institute of Psychiatry, Psychology & Neuroscience, King's College London, London SE1 1UL, UK; MRC Centre for Neurodevelopmental Disorders, Institute of Psychiatry, Psychology & Neuroscience, King's College London, London SE1 1UL, UK. Electronic address: benedikt.berninger@kcl.ac.uk.

Funding

Medical Research Council MR/N026063/1Wellcome Trust 206410/Z/17Wellcome Trust 206410/Z/17/Z
6 · The paper itself

Abstract

A broad molecular framework of how neural stem cells are specified toward astrocyte fate during brain development has proven elusive. Here we perform comprehensive and integrated transcriptomic and epigenomic analyses to delineate gene regulatory programs that drive the developmental trajectory from mouse embryonic stem cells to astrocytes. We report molecularly distinct phases of astrogliogenesis that exhibit stage- and lineage-specific transcriptomic and epigenetic signatures with unique primed and active chromatin regions, thereby revealing regulatory elements and transcriptional programs underlying astrocyte generation and maturation. By searching for transcription factors that function at these elements, we identified NFIA and ATF3 as drivers of astrocyte differentiation from neural precursor cells while RUNX2 promotes astrocyte maturation. These transcription factors facilitate stage-specific gene expression programs by switching the chromatin state of their target regulatory elements from primed to active. Altogether, these findings provide integrated insights into the genetic and epigenetic mechanisms steering the trajectory of astrogliogenesis.

Indexed as

Activating Transcription Factor 3AnimalsCells, CulturedCore Binding Factor Alpha 1 SubunitGene Expression RegulationMaleMiceMice, Inbred C57BLNeurogenesisNFI Transcription FactorsActivating Transcription Factor 3Atf3 protein, mouseCore Binding Factor Alpha 1 SubunitNfia protein, mouseNFI Transcription FactorsRunx2 protein, mouseastrocyteastrogliogenesiscell fateepigenetic mechanismsgene regulationneural stem cellsneurogenesistranscription factors

Identifiers

PMID30290178
PMCPMC6179960

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.