Evidence map›Paper›PMID 30289953›Full record

ArticlePloS one2018

Cu/Zn-superoxide dismutase forms fibrillar hydrogels in a pH-dependent manner via a water-rich extended intermediate state.

Noriko Fujiwara, Michiru Wagatsuma, Naoto Oba, Daisaku Yoshihara, Eiichi Tokuda, Haruhiko Sakiyama, Hironobu Eguchi, Motoko Ichihashi, Yoshiaki Furukawa, Tadashi Inoue and 1 more

Abstract read
In one paragraph

Article in PloS one, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Noriko FujiwaraDepartment of Biochemistry, Hyogo College of Medicine, Nishinomiya, Hyogo, Japan.ORCID 0000-0003-0931-7453
Michiru WagatsumaResearch and Development, ULVAC, Chigasaki, Kanagawa, Japan.
Naoto ObaDepartment of Macromolecular Science, Graduate School of Science, Osaka University, Toyonaka, Osaka, Japan.
Daisaku YoshiharaDepartment of Biochemistry, Hyogo College of Medicine, Nishinomiya, Hyogo, Japan.
Eiichi TokudaDepartment of Chemistry, Keio University, Yokohama, Kanagawa, Japan.
Haruhiko SakiyamaDepartment of Biochemistry, Hyogo College of Medicine, Nishinomiya, Hyogo, Japan.
Hironobu EguchiDepartment of Biochemistry, Hyogo College of Medicine, Nishinomiya, Hyogo, Japan.
Motoko IchihashiResearch and Development, ULVAC, Chigasaki, Kanagawa, Japan.
Yoshiaki FurukawaDepartment of Chemistry, Keio University, Yokohama, Kanagawa, Japan.
Tadashi InoueDepartment of Macromolecular Science, Graduate School of Science, Osaka University, Toyonaka, Osaka, Japan.
Keiichiro SuzukiDepartment of Biochemistry, Hyogo College of Medicine, Nishinomiya, Hyogo, Japan.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Under certain conditions, amyloid-like fibrils can develop into three-dimensional networks and form hydrogels by a self-assembly process. When Cu/Zn superoxide dismutase (SOD1), an anti-oxidative enzyme, undergoes misfolding, fibrillar aggregates are formed, which are a hallmark of a certain form of familial amyotrophic lateral sclerosis (ALS). However, the issue of whether SOD1 fibrils can be assembled into hydrogels remains to be tested. Here, we show that the SOD1 polypeptides undergo hydrogelation accompanied by the formation of thioflavin T-positive fibrils at pH 3.0 and 4.0, but not at pH 5.0 where precipitates are formed. The results of viscoelastic analyses indicate that the properties of SOD1 hydrogels (2%) were similar to and slightly more fragile than a 0.25% agarose gel. In addition, monitoring by a quartz crystal microbalance with admittance analysis showed that the denaturing of immobilized SOD1 on a sensor under the hydrogelation conditions at pH 3.0 and 4.0 resulted in an increase in the effective acoustic thickness from ~3.3 nm (a folded rigid form) to ~50 and ~100 nm (an extended water-rich state), respectively. In contrast, when SOD1 was denatured under the same conditions at pH 5.0, a compact water-poor state with an effective acoustic thickness of ~10 nm was formed. The addition of physiological concentrations of NaCl to the pH 4.0 sample induced a further extension of the SOD1 with larger amounts of water molecules (with an effective acoustic thickness of ~200 nm) but suppressed hydrogel formation. These results suggest that different denatured intermediate states of the protein before self-assembly play a major role in determining the characteristics of the resulting aggregates and that a conformational change to a suitable level of extended water-rich intermediate state before and/or during intermolecular assembling is required for fibrillation and hydrogelation in the case of globular proteins.

Indexed as

AmyloidBenzothiazolesHumansHydrogelsHydrogen-Ion ConcentrationKineticsProtein DenaturationProtein MultimerizationRecombinant ProteinsSodium ChlorideSuperoxide Dismutase-1Viscoelastic SubstancesWaterAmyloidBenzothiazolesHydrogelsRecombinant ProteinsSOD1 protein, humanSodium ChlorideSuperoxide Dismutase-1thioflavin TViscoelastic SubstancesWater

Identifiers

PMID30289953
PMCPMC6173426

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.