Evidence map›Paper›PMID 30289819›Full record

ArticlePharmacogenetics and genomics2018

Targeted sequencing identifies a missense variant in the BEST3 gene associated with antihypertensive response to hydrochlorothiazide.

Sonal Singh, Zhiying Wang, Mohamed H Shahin, Taimour Y Langaee, Yan Gong, Stephen T Turner, Arlene B Chapman, John G Gums, Caitrin W McDonough, Kent R Bailey and 5 more

Open access · greenAbstract read
In one paragraph

Article in Pharmacogenetics and genomics, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.9field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 9 citations in OpenAlex.

  1. Trial
  2. Trial
  3. Trial
  4. Review
  5. Pharmacogenomics of Hypertension Treatment.International journal of molecular sciences · 2020
    Review
  6. Pharmacogenomics And Hypertension: Current Insights.Pharmacogenomics and personalized medicine · 2019
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 7 institutions in 2 countries.

Sonal SinghDepartments of Pharmacotherapy and Translational Research and Center for Pharmacogenomics.
Zhiying WangHuman Genetics and Institute of Molecular Medicine, University of Texas Health Science Center.
Mohamed H ShahinDepartments of Pharmacotherapy and Translational Research and Center for Pharmacogenomics.
Taimour Y LangaeeDepartments of Pharmacotherapy and Translational Research and Center for Pharmacogenomics.
Yan GongDepartments of Pharmacotherapy and Translational Research and Center for Pharmacogenomics.
Stephen T TurnerDivision of Nephrology and Hypertension, Mayo Clinic, Rochester, Minnesota.
Arlene B ChapmanDivision of Nephrology, University of Chicago, Chicago, Illinois, USA.
John G GumsDepartments of Pharmacotherapy and Translational Research and Center for Pharmacogenomics.
Caitrin W McDonoughDepartments of Pharmacotherapy and Translational Research and Center for Pharmacogenomics.
Kent R BaileyDepartment of Health Sciences Research, Division of Biostatistics.
Amber L BeitelsheesCollege of Medicine, University of Maryland, Baltimore, Maryland.
Rhonda M Cooper-DeHoffDepartments of Pharmacotherapy and Translational Research and Center for Pharmacogenomics.
Steve SchererHuman Genome Sequencing Center, Baylor College of Medicine, Houston, Texas.
Eric BoerwinkleHuman Genetics and Institute of Molecular Medicine, University of Texas Health Science Center.
Julie A JohnsonDepartments of Pharmacotherapy and Translational Research and Center for Pharmacogenomics.
Baylor Genetics · USDepartment of Medical Sciences · BYGTx (United States) · USMayo Clinic · USUniversity of Chicago · USUniversity of Florida · USUniversity of Maryland, Baltimore · US

Funding

Implementing a Maternal health and PRegnancy Outcomes Vision for Everyone (IMPROVE)UL1TR002378 · NCATS · EMORY UNIVERSITY · PI Andres J Garcia, Elizabeth O. Ofili · 2017 to 2026
$92.1M
Mayo Clinic Center for Clinical and Translational Science (CCaTS UL1 Supplement - Dr. Timothy Curry)UL1TR002377 · NCATS · MAYO CLINIC ROCHESTER · PI VESNA D GAROVIC · 2017 to 2026
$78.4M
Mayo Clinic Center for Translational Science ActivitiesUL1TR000135 · NCATS · MAYO CLINIC ROCHESTER · PI KHOSLA, SUNDEEP · 2012 to 2015
$41.2M
Using social networks to map and evaluate team science across CTSA hubsUL1TR001427 · NCATS · UNIVERSITY OF FLORIDA · PI MITCHELL, DUANE A. · 2015 to 2024
$37.2M
Atlanta Clinical and Translational Science Institute (ACTSI) RenewalUL1TR000454 · NCATS · EMORY UNIVERSITY · PI STEPHENS, DAVID S · 2012 to 2016
$25.8M
Pharmacogenomic Evaluation of Antihypertensive ResponsesU01GM074492 · NIGMS · UNIVERSITY OF FLORIDA · PI JOHNSON, JULIE A. · 2005 to 2014
$20.7M
Pharmacogenomics of Membrane TransportersU19GM061390 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI KWOK, PUI-YAN · 2010 to 2014
$16.3M
Pharmacogenetics of Phase II Drug Metabolizing EnzymesU19GM061388 · NIGMS · MAYO CLINIC ROCHESTER · PI WEINSHILBOUM, RICHARD M. · 2010 to 2014
$15.8M
UF Clinical and Translational Science AwardUL1TR000064 · NCATS · UNIVERSITY OF FLORIDA · PI NELSON, DAVID R · 2012 to 2014
$12.2M
Shared Core: Biobanking, Bioinformatics and Data ManagementU54HG006938 · NHGRI · WITS HEALTH CONSORTIUM (PTY), LTD · PI RAMSAY, MICHELE MICHELE · 2012 to 2022
$12.2M
TRAININGU54GM114838 · NIGMS · UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN · PI HAN, JIAWEI, SINHA, SAURABH · 2014 to 2017
$10.8M
Together: Transforming and Translating Discovery to Improve HealthKL2TR001429 · NCATS · UNIVERSITY OF FLORIDA · PI GUIRGIS, FAHEEM W, LEEUWENBURGH, CHRISTIAAN · 2015 to 2023
$5.5M
NCATS NIH HHS KL2 TR001429NCATS NIH HHS UL1 TR000064NCATS NIH HHS UL1 TR000135NCATS NIH HHS UL1 TR000454NCATS NIH HHS UL1 TR001427NCATS NIH HHS UL1 TR002377NCATS NIH HHS UL1 TR002378NHGRI NIH HHS U54 HG006938NIGMS NIH HHS U01 GM074492NIGMS NIH HHS U19 GM061388NIGMS NIH HHS U19 GM061390NIGMS NIH HHS U54 GM114838
6 · The paper itself

Abstract

Chromosome 12q15 was identified in Genetic Epidemiology of Response Assessment (GERA) and replicated in Pharmacogenomic Evaluation of Antihypertensive Responses (PEAR) for its association with blood pressure (BP) response to hydrochlorothiazide (HCTZ). However, the functional variant is unknown and we aimed to identify the likely functional variants through targeted sequencing. The chromosome 12q15 region was sequenced in 397 best and worst responders to HCTZ in PEAR (N=199) and GERA (N=198) hypertensive study participants. Logistic regression was used for the association analysis adjusting for age, sex, race, and principal components 1 and 2. For validation, the significant single nucleotide polymorphism was tested for association with the change in systolic (ΔSBP) and diastolic BP (ΔDBP) post-treatment in the entire PEAR (N=370) and GERA (N=570) cohorts. A novel missense polymorphism (G>A, Pro383Leu) in BEST3, rs61747221, was significantly associated with better HCTZ response (P=0.0021, odds ratio=2.05). It was validated in the entire cohort of PEAR (ΔSBP: P=0.021, β=-1.60, ΔDBP: P=0.023, β=-1.08) and GERA (ΔSBP: P=0.028, β=-1.95, ΔDBP: P=0.032, β=-1.28). BEST3 encodes the calcium sensitive chloride channel in the vascular smooth muscle implicated in the regulation of BP, especially in response to vasoconstrictors like angiotensin II. These results suggest that BEST3 is involved in the chronic BP lowering mechanism of thiazides and highlight its importance as a genetic predictor of the BP response to thiazide diuretics.

Indexed as

Genetic Association StudiesAdultAngiotensin IIAntihypertensive AgentsAtenololBestrophinsBlood PressureFemaleHumansHypertensionMaleMiddle AgedMuscle ProteinsPolymorphism, Single NucleotideSodium Chloride Symporter InhibitorsAngiotensin IIAntihypertensive AgentsAtenololBEST3 protein, humanBestrophinsMuscle ProteinsSodium Chloride Symporter Inhibitors

Identifiers

PMID30289819
PMCPMC6262886
OpenAlexW2894947328

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.