Evidence map›Paper›PMID 30289692›Full record

ArticleBiochemistry2018

Discovery and Characterization of a Thioesterase-Specific Monoclonal Antibody That Recognizes the 6-Deoxyerythronolide B Synthase.

Xiuyuan Li, Natalia Sevillano, Florencia La Greca, Jake Hsu, Irimpan I Mathews, Tsutomu Matsui, Charles S Craik, Chaitan Khosla

Abstract read
In one paragraph

Article in Biochemistry, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Review
  2. Article
  3. Thioesterase enzyme families: Functions, structures, and mechanisms.Protein science : a publication of the Protein Society · 2022
    Article
  4. Fragment antigen binding domains (FSynthetic and systems biotechnology · 2022
    Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Xiuyuan Li
Natalia SevillanoDepartment of Pharmaceutical Chemistry , University of California San Francisco , San Francisco , California 94158 , United States.
Florencia La GrecaDepartment of Pharmaceutical Chemistry , University of California San Francisco , San Francisco , California 94158 , United States.
Jake Hsu
Irimpan I MathewsStanford Synchrotron Radiation Lightsource, SLAC National Accelerator Laboratory , Stanford University , Menlo Park , California 94025 , United States.ORCID 0000-0001-6254-3519
Tsutomu MatsuiDepartment of Pharmaceutical Chemistry , University of California San Francisco , San Francisco , California 94158 , United States.
Charles S CraikDepartment of Pharmaceutical Chemistry , University of California San Francisco , San Francisco , California 94158 , United States.ORCID 0000-0001-7704-9185

Funding

X-ray Absorption Spectroscopy (XAS) pp.711-759P41GM103393 · NIGMS · STANFORD UNIVERSITY · PI HODGSON, KEITH O · 2012 to 2019
$30.6M
Renewable antibodies to secreted proteins and single and multi-pass cell surfaceP41CA196276 · NCI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI WELLS, JAMES A · 2014 to 2018
$5.8M
Structure, Mechanism, and Engineering of Assembly Line Polyketide SynthasesR01GM087934 · NIGMS · STANFORD UNIVERSITY · PI KHOSLA, CHAITAN · 2009 to 2021
$4.9M
Allosteric Inhibition of a Family of Proteolytic EnzymesR01GM104659 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI CRAIK, CHARLES SCOTT · 2013 to 2016
$1.2M
NCI NIH HHS P41 CA196276NIGMS NIH HHS P41 GM103393NIGMS NIH HHS R01 GM087934NIGMS NIH HHS R01 GM104659
6 · The paper itself

Abstract

Assembly line polyketide synthases (PKSs) are large multimodular enzymes responsible for the biosynthesis of diverse antibiotics in bacteria. Structural and mechanistic analysis of these megasynthases can benefit from the discovery of reagents that recognize individual domains or linkers in a site-specific manner. Monoclonal antibodies not only have proven themselves as premier tools in analogous applications but also have the added benefit of constraining the conformational flexibility of their targets in unpredictable but often useful ways. Here we have exploited a library based on the naïve human antibody repertoire to discover a F

Indexed as

Antibodies, MonoclonalCatalysisCrystallography, X-RayErythromycinHumansModels, MolecularMolecular StructurePolyketide SynthasesProtein ConformationSubstrate Specificity6-deoxyerythronolide BAntibodies, MonoclonalErythromycinPolyketide Synthases

Identifiers

PMID30289692
PMCPMC6424575

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.