Evidence map›Paper›PMID 30289408›Full record

ArticleActa crystallographica. Section D, Structural biology2018

Identification of the site of oxidase substrate binding in Scytalidium thermophilum catalase.

Yonca Yuzugullu Karakus, Gunce Goc, Sinem Balci, Briony A Yorke, Chi H Trinh, Michael J McPherson, Arwen R Pearson

Open access · hybridAbstract read
In one paragraph

Article in Acta crystallographica. Section D, Structural biology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
1.7field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 8 citations in OpenAlex.

  1. Article
  2. Article
  3. Monofunctional Heme-Catalases.Antioxidants (Basel, Switzerland) · 2022
    Review
  4. Pyrolysis molecule ofSaudi journal of biological sciences · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 3 countries.

Yonca Yuzugullu KarakusDepartment of Biology, Kocaeli University, Umuttepe, 41380 Kocaeli, Turkey.
Gunce GocDepartment of Biology, Kocaeli University, Umuttepe, 41380 Kocaeli, Turkey.ORCID 0000-0002-1963-8317
Sinem BalciDepartment of Biology, Kocaeli University, Umuttepe, 41380 Kocaeli, Turkey.ORCID 0000-0002-7315-2422
Briony A YorkeThe Hamburg Centre for Ultrafast Imaging, Institute for Nanostructure and Solid State Physics, Universität Hamburg, 22761 Hamburg, Germany.ORCID 0000-0002-1868-8435
Chi H TrinhAstbury Centre for Structural Molecular Biology, University of Leeds, Leeds LS2 9JT, England.ORCID 0000-0002-5087-5011
Michael J McPhersonAstbury Centre for Structural Molecular Biology, University of Leeds, Leeds LS2 9JT, England.ORCID 0000-0002-0719-6427
Arwen R PearsonThe Hamburg Centre for Ultrafast Imaging, Institute for Nanostructure and Solid State Physics, Universität Hamburg, 22761 Hamburg, Germany.ORCID 0000-0001-8499-7490
Kocaeli Üniversitesi · TRUniversität Hamburg · DEUniversity of Leeds · GB

Funding

Wellcome TrustWellcome Trust 110296/Z/15/Z
6 · The paper itself

Abstract

The catalase from Scytalidium thermophilum is a homotetramer containing a heme d in each active site. Although the enzyme has a classical monofunctional catalase fold, it also possesses oxidase activity towards a number of small organics, including catechol and phenol. In order to further investigate this, the crystal structure of the complex of the catalase with the classical catalase inhibitor 3-amino-1,2,4-triazole (3TR) was determined at 1.95 Å resolution. Surprisingly, no binding to the heme site was observed; instead, 3TR occupies a binding site corresponding to the NADPH-binding pocket in mammalian catalases at the entrance to a lateral channel leading to the heme. Kinetic analysis of site-directed mutants supports the assignment of this pocket as the binding site for oxidase substrates.

Indexed as

Binding SitesAmitroleCatalaseCatalytic DomainCrystallography, X-RayFungal ProteinsFungiHemeNADPOxidoreductasesAmitroleCatalaseFungal ProteinsHemeheme dNADPOxidoreductases3-amino-1,2,4-triazolebinding pocketcatalaselateral channelNADPHoxidaseScytalidium thermophilum

Identifiers

PMID30289408
PMCPMC6173053
OpenAlexW2895375910

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.