Evidence map›Paper›PMID 30289342›Full record

ArticleGut microbes2020

Detection of mixed-strain infections by FACS and ultra-low input genome sequencing.

Mária Džunková, Andrés Moya, Xinhua Chen, Ciaran Kelly, Giuseppe D'Auria

Open access · goldAbstract read
In one paragraph

Article in Gut microbes, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.3field-weighted citation impact, top 42% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 7 citations in OpenAlex.

  1. Article
  2. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 3 countries.

Mária DžunkováDepartment of Genomics and Health, Foundation for the Promotion of Health and Biomedical Research of Valencia Region (FISABIO-Public Health) , València, Spain.ORCID 0000-0002-1765-0697
Andrés MoyaDepartment of Genomics and Health, Foundation for the Promotion of Health and Biomedical Research of Valencia Region (FISABIO-Public Health) , València, Spain.
Xinhua ChenDivision of Gastroenterology, Beth Israel Deaconess Medical Center, Harvard Medical School , Boston, USA.
Ciaran KellyDivision of Gastroenterology, Beth Israel Deaconess Medical Center, Harvard Medical School , Boston, USA.
Giuseppe D'AuriaDepartment of Genomics and Health, Foundation for the Promotion of Health and Biomedical Research of Valencia Region (FISABIO-Public Health) , València, Spain.
Consejo Superior de Investigaciones Científicas · ESBeth Israel Deaconess Medical Center · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The epidemiological tracking of a bacterial outbreak may be jeopardized by the presence of multiple pathogenic strains in one patient. Nevertheless, this fact is not considered in most of the epidemiological studies and only one colony per patient is sequenced. On the other hand, the routine whole genome sequencing of many isolates from each patient would be costly and unnecessary, because the number of strains in a patient is never known

Indexed as

Flow CytometryClostridioides difficileClostridium InfectionsCoinfectionDNA, BacterialFecesGenome, BacterialHumansMicrobiological TechniquesMicrobiotaRNA, Ribosomal, 16SSequence Analysis, DNADNA, BacterialRNA, Ribosomal, 16SC. difficileepidemiologyFACS-seqlow-input DNA sequencingmixed-strain infection

Identifiers

PMID30289342
PMCPMC7524272
OpenAlexW2894588497

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.