Evidence map›Paper›PMID 30288816›Full record

ArticleMolecular microbiology2019

Lon recognition of the replication initiator DnaA requires a bipartite degron.

Jing Liu, Rilee Zeinert, Laura Francis, Peter Chien

Abstract read
In one paragraph

Article in Molecular microbiology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed.

  1. Proteomic survey of the DNA damage response inJournal of bacteriology · 2023
    Article
  2. Proteomic survey of the DNA damage response inbioRxiv : the preprint server for biology · 2023
    Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. Review
  8. Quantitative Proteome Profiling of aFrontiers in plant science · 2021
    Article
  9. Degradation of Lon in Caulobacter crescentus.Journal of bacteriology · 2020
    Article
  10. Article
  11. Article
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Jing LiuDepartment of Biochemistry and Molecular Biology, University of Massachusetts Amherst, MA, 01002, USA.
Rilee ZeinertDepartment of Biochemistry and Molecular Biology, University of Massachusetts Amherst, MA, 01002, USA.
Laura FrancisDepartment of Biology, University of Massachusetts Amherst, MA, 01002, USA.
Peter ChienDepartment of Biochemistry and Molecular Biology, University of Massachusetts Amherst, MA, 01002, USA.ORCID 0000-0001-6733-1478

Funding

CHEMISTRY-BIOLOGY INTERFACE PREDOCTORAL TRAINING GRANTST32GM008515 · NIGMS · UNIVERSITY OF MASSACHUSETTS AMHERST · PI THOMPSON, LYNMARIE K. · 1995 to 2020
$4.3M
Stress related proteases in Caulobacter crescentusR01GM111706 · NIGMS · UNIVERSITY OF MASSACHUSETTS AMHERST · PI CHIEN, PETER · 2014 to 2018
$1.6M
Chemistry Biology Interface Program Training T32GM08515Interface R01GM111706National Institute of Health R01GM111706NIGMS NIH HHS R01 GM111706NIGMS NIH HHS R01GM111706NIGMS NIH HHS T32 GM008515NIGMS NIH HHS T32GM08515UMass Amherst
6 · The paper itself

Abstract

DnaA initiates chromosome replication in bacteria. In Caulobacter crescentus, the Lon protease degrades DnaA to coordinate replication with nutrient availability and to halt the cell cycle during acute stress. Here, we characterize the mechanism of DnaA recognition by Lon. We find that the folded state of DnaA appears crucial for its degradation, in contrast to the well-known role of Lon in degrading misfolded proteins. We fail to identify a single degradation motif (degron) sufficient for DnaA degradation, rather we show that both the ATPase domain and a species-specific N-terminal motif are important for productive Lon degradation of full-length DnaA. Mutations in either of these determinants disrupt DnaA degradation in vitro and in vivo. However, analysis of truncation products reveals that appending other extensions to the ATPase domain is sufficient to trigger degradation, suggesting plasticity in Lon recognition. Our final working model is that Lon engages DnaA through at least two elements, one of which anchors DnaA to Lon and the other acting as an initiation site for degradation.

Indexed as

Bacterial ProteinsCaulobacter crescentusDNA-Binding ProteinsDNA HelicasesDNA Mutational AnalysisGene Expression Regulation, BacterialProtease LaProtein BindingProteolysisTrans-ActivatorsBacterial ProteinsDnaA protein, BacteriaDNA-Binding ProteinsDNA HelicasesProtease Lareplication initiator proteinTrans-Activators

Identifiers

PMID30288816
PMCPMC6351198

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.