Evidence map›Paper›PMID 30287924›Full record

ArticleGenetics in medicine : official journal of the American College of Medical Genetics2019

Putting genome-wide sequencing in neonates into perspective.

Pleuntje J van der Sluijs, Emmelien Aten, Daniela Q C M Barge-Schaapveld, Emilia K Bijlsma, Regina Bökenkamp-Gramann, Laura Donker Kaat, Remco van Doorn, Dietje Fransen van de Putte, Arie van Haeringen, Arend D J Ten Harkel and 22 more

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Article in Genetics in medicine : official journal of the American College of Medical Genetics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 13 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Article
  3. Review
  4. Review
  5. Review
  6. Article
  7. Article
  8. Heterozygous variants in SPTBN1 cause intellectual disability and autism.American journal of medical genetics. Part A · 2021
    Article
  9. Article
  10. Article
  11. Article
  12. Exome sequencing compared with standard genetic tests for critically ill infants with suspected genetic conditions.Genetics in medicine : official journal of the American College of Medical Genetics · 2020
    Article
  13. From diagnostic yield to clinical impact: a pilot study on the implementation of prenatal exome sequencing in routine care.Genetics in medicine : official journal of the American College of Medical Genetics · 2019
    Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

32 authors.

Pleuntje J van der SluijsDepartment of Clinical Genetics, Leiden University Medical Center, Leiden, The Netherlands.
Emmelien AtenDepartment of Clinical Genetics, Leiden University Medical Center, Leiden, The Netherlands.
Daniela Q C M Barge-SchaapveldDepartment of Clinical Genetics, Leiden University Medical Center, Leiden, The Netherlands.
Emilia K BijlsmaDepartment of Clinical Genetics, Leiden University Medical Center, Leiden, The Netherlands.
Regina Bökenkamp-GramannDepartment of Pediatric Cardiology, Leiden University Medical Center, Leiden, The Netherlands.
Laura Donker KaatDepartment of Clinical Genetics, Leiden University Medical Center, Leiden, The Netherlands.
Remco van DoornDepartment of Dermatology, Leiden University Medical Center, Leiden, The Netherlands.
Dietje Fransen van de PutteDepartment of Clinical Genetics, Leiden University Medical Center, Leiden, The Netherlands.
Arie van HaeringenDepartment of Clinical Genetics, Leiden University Medical Center, Leiden, The Netherlands.
Arend D J Ten HarkelDepartment of Pediatric Cardiology, Leiden University Medical Center, Leiden, The Netherlands.
Yvonne Hilhorst-HofsteeDepartment of Clinical Genetics, Leiden University Medical Center, Leiden, The Netherlands.
Mariette J V HofferDepartment of Clinical Genetics, Leiden University Medical Center, Leiden, The Netherlands.
Nicolette S den HollanderDepartment of Clinical Genetics, Leiden University Medical Center, Leiden, The Netherlands.
Yvette van IerlandDepartment of Clinical Genetics, Leiden University Medical Center, Leiden, The Netherlands.
Marije KoopmansDepartment of Clinical Genetics, Leiden University Medical Center, Leiden, The Netherlands.
Marjolein KriekDepartment of Clinical Genetics, Leiden University Medical Center, Leiden, The Netherlands.
Setareh MoghadasiDepartment of Clinical Genetics, Leiden University Medical Center, Leiden, The Netherlands.
Esther A R NibbelingDepartment of Clinical Genetics, Leiden University Medical Center, Leiden, The Netherlands.
Cacha M P C D Peeters-ScholteDepartment of Neurology, Leiden University Medical Center, Leiden, The Netherlands.
Thomas P PotjerDepartment of Clinical Genetics, Leiden University Medical Center, Leiden, The Netherlands.
Maartje van RijDepartment of Clinical Genetics, Leiden University Medical Center, Leiden, The Netherlands.
Claudia A L RuivenkampDepartment of Clinical Genetics, Leiden University Medical Center, Leiden, The Netherlands.
Julie W RuttenDepartment of Clinical Genetics, Leiden University Medical Center, Leiden, The Netherlands.
Sylke J SteggerdaDepartment of Pediatrics, Division of Neonatology, Leiden University Medical Center, Leiden, The Netherlands.
Manon SuerinkDepartment of Clinical Genetics, Leiden University Medical Center, Leiden, The Netherlands.
Ratna N G B TanDepartment of Pediatrics, Division of Neonatology, Leiden University Medical Center, Leiden, The Netherlands.
Karin van der TuinDepartment of Clinical Genetics, Leiden University Medical Center, Leiden, The Netherlands.
Remco VisserDepartment of Pediatrics, Division of Neonatology, Leiden University Medical Center, Leiden, The Netherlands.
Anne-Sophie van der Werf-'t LamDepartment of Clinical Genetics, Leiden University Medical Center, Leiden, The Netherlands.
Monique WilliamsDepartment of Pediatrics, Leiden University Medical Center, Leiden, The Netherlands.
Ruben WitloxDepartment of Pediatrics, Division of Neonatology, Leiden University Medical Center, Leiden, The Netherlands.
Gijs W E SantenDepartment of Clinical Genetics, Leiden University Medical Center, Leiden, The Netherlands. santen@lumc.nl.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

purposeSeveral studies have reported diagnostic yields up to 57% for rapid exome or genome sequencing (rES/GS) as a single test in neonatal intensive care unit (NICU) patients, but the additional yield of rES/GS compared with other available diagnostic options still remains unquantified in this population.

methodsWe retrospectively evaluated all genetic NICU consultations in a 2-year period.

resultsIn 132 retrospectively evaluated NICU consultations 27 of 32 diagnoses (84.4%) were made using standard genetic workup. Most diagnoses (65.6%) were made within 16 days. Diagnostic ES yield was 5/29 (17.2%). Genetic diagnoses had a direct effect on clinical management in 90.6% (29/32) of patients.

conclusionsOur study shows that exome sequencing has a place in NICU diagnostics, but given the associated costs and the high yield of alternative diagnostic strategies, we recommend to first perform clinical genetic consultation.

Indexed as

Chromosome MappingExomeExome SequencingFemaleGenetic TestingGenome-Wide Association StudyHumansInfant, NewbornInfant, Newborn, DiseasesIntensive Care, NeonatalMaleRetrospective Studiesclinical geneticistsESNICUrapidsequencing

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.