Evidence map›Paper›PMID 30287845›Full record

ArticleScientific reports2018

A Next-Generation Sequencing-Based Platform for Quantitative Detection of Hepatitis B Virus Pre-S Mutants in Plasma of Hepatocellular Carcinoma Patients.

Chiao-Fang Teng, Hsi-Yuan Huang, Tsai-Chung Li, Woei-Cherng Shyu, Han-Chieh Wu, Chien-Yu Lin, Ih-Jen Su, Long-Bin Jeng

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
1.9field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 22 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Chiao-Fang TengGraduate Institute of Biomedical Sciences, China Medical University, Taichung, Taiwan. chiaofangteng@gmail.com.
Hsi-Yuan HuangDepartment of Laboratory Medicine, China Medical University Hospital, Taichung, Taiwan.
Tsai-Chung LiDepartment of Public Health, College of Public Health, China Medical University, Taichung, Taiwan.ORCID http://orcid.org/0000-0002-3346-7462
Woei-Cherng ShyuGraduate Institute of Biomedical Sciences, China Medical University, Taichung, Taiwan.
Han-Chieh WuNational Institute of Infectious Diseases and Vaccinology, National Health Research Institutes, Tainan, Taiwan.
Chien-Yu LinGraduate Institute of Clinical Medical Science and School of Medicine, China Medical University, Taichung, Taiwan.
Ih-Jen SuDepartment of Occupational Therapy, Asia University, Taichung, Taiwan. suihjen0704@mail.stust.edu.tw.
Long-Bin JengOrgan Transplantation Center, China Medical University Hospital, Taichung, Taiwan. longbin.cmuh@gmail.com.ORCID http://orcid.org/0000-0002-4588-2268
China Medical University · TWAsia University · TWNational Health Research Institutes · TW

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Hepatocellular carcinoma (HCC) is a leading cause of cancer-related death worldwide. Early diagnosis and treatment of HCC remain a key goal for improving patient survival. Chronic hepatitis B virus (HBV) infection is a major risk factor for HCC development. Pre-S mutants harboring deletions in HBV large surface antigen have been well demonstrated as HBV oncoproteins that dysregulate multiple signaling pathways in hepatocytes, leading to HCC formation. The presence of pre-S mutants in plasma represents important predictive and prognostic markers for HCC in patients with chronic HBV infection. However, the method to detect pre-S mutants remains to be optimized. In this study, we developed a platform, based on the next-generation sequencing (NGS) technology, for detection of pre-S mutants in plasma of HBV-related HCC patients. Compared to the current TA cloning-based analysis, the NGS-based analysis could detect pre-S deletion quantitatively, and the detection rate was significantly more sensitive in 49 plasma analyzed (McNemar's paired proportion test, P value < 0.0001; simple kappa coefficient, κ = 0.29 (95% CI, 0.12 to 0.46)). Our data suggest that the NGS-based platform may hold a promise for improving the clinical application of pre-S mutants in serving as predictive and prognostic markers for HBV-related HCC.

Indexed as

Genes, ViralAdultAgedCarcinoma, HepatocellularFemaleGenotypeHepatitis B Surface AntigensHepatitis B virusHigh-Throughput Nucleotide SequencingHumansLiver NeoplasmsMaleMiddle AgedMutationHepatitis B Surface Antigens

Identifiers

PMID30287845
PMCPMC6172208
OpenAlexW2893105413

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.