Evidence map›Paper›PMID 30287485›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2018

Integrative genomic analysis of mouse and human hepatocellular carcinoma.

Michelle Dow, Rachel M Pyke, Brian Y Tsui, Ludmil B Alexandrov, Hayato Nakagawa, Koji Taniguchi, Ekihiro Seki, Olivier Harismendy, Shabnam Shalapour, Michael Karin and 2 more

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 59 papers.

0numbers the graph read from it
0cells of the map it votes in
59citing papers in PubMed
5.8field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

59 citing papers in PubMed, 88 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Review
  5. Orthogonal disentanglement of single-cell multi-omics reveals private and shared drivers of tissue development and pathogenesis.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  6. Oncogenic function and transcriptional dynamics of MYCN in liver tumorigenesis.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  7. Article
  8. Article
  9. Precision models in hepatocellular carcinoma.Nature reviews. Gastroenterology & hepatology · 2025
    Review
  10. Article
  11. Article
  12. Article
  13. Diethylnitrosamine Induction of Hepatocarcinogenesis in Mice.Methods in molecular biology (Clifton, N.J.) · 2024
    Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 5 institutions in 2 countries.

Michelle DowDivision of Medical Genetics, Department of Medicine, University of California, San Diego, La Jolla, CA 92093.
Rachel M PykeDivision of Medical Genetics, Department of Medicine, University of California, San Diego, La Jolla, CA 92093.
Brian Y TsuiDivision of Medical Genetics, Department of Medicine, University of California, San Diego, La Jolla, CA 92093.ORCID 0000-0001-8017-5895
Ludmil B AlexandrovDepartment of Cellular and Molecular Medicine, University of California, San Diego, La Jolla, CA 92093.ORCID 0000-0003-3596-4515
Hayato NakagawaDepartment of Gastroenterology, Graduate School of Medicine, The University of Tokyo, 113-8655 Tokyo, Japan.
Koji TaniguchiLaboratory of Gene Regulation and Signal Transduction, School of Medicine, University of California, San Diego, La Jolla, CA 92093.
Ekihiro SekiDepartment of Medicine, Cedars-Sinai Medical Center, Los Angeles, CA 90048.
Olivier HarismendyHealth Science, Department of Biomedical Informatics, School of Medicine, University of California, San Diego, La Jolla, CA 92093.
Shabnam ShalapourLaboratory of Gene Regulation and Signal Transduction, School of Medicine, University of California, San Diego, La Jolla, CA 92093.
Michael KarinLaboratory of Gene Regulation and Signal Transduction, School of Medicine, University of California, San Diego, La Jolla, CA 92093; karinoffice@ucsd.edu hkcarter@ucsd.edu joan.font-burgada@fccc.edu.
Hannah CarterDivision of Medical Genetics, Department of Medicine, University of California, San Diego, La Jolla, CA 92093; karinoffice@ucsd.edu hkcarter@ucsd.edu joan.font-burgada@fccc.edu.
Joan Font-BurgadaCancer Biology Program, Fox Chase Cancer Center, Philadelphia, PA 19111 karinoffice@ucsd.edu hkcarter@ucsd.edu joan.font-burgada@fccc.edu.
University of California San Diego · USCedars-Sinai Medical Center · USFox Chase Cancer Center · USKeio University · JPThe University of Tokyo · JP

Funding

VIRAL MALIGNANCYP30CA023100 · NCI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI DIANE M SIMEONE · 1985 to 2026
$124.9M
Yeast Genetics and Stress Response Genes-BiomedicalP42ES010337 · NIEHS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI TUKEY, ROBERT H · 2000 to 2022
$69.8M
San Diego Biomedical Informatics Education & Research (SABER)T15LM011271 · NLM · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI SHAMIM NEMATI · 2012 to 2026
$9.7M
REGULATION OF NFKB AND IKK BY PROINFLAMMATORY STIMULIR01AI043477 · NIAID · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI KARIN, MICHAEL · 1998 to 2017
$7.4M
NF-kappaB and Mitochondrial Signals as Positive and Negative Regulators of InflammationR37AI043477 · NIAID · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI Michael Karin · 2018 to 2026
$6.0M
LPS binding to TLR4 regulates hepatic stellate cell activation and fibrosisR01DK085252 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI EKIHIRO SEKI · 2011 to 2026
$4.8M
Role of Inflammation in tumor promotion and progressionR01CA118165 · NCI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI KARIN, MICHAEL · 2007 to 2016
$4.6M
IKK <alpha> and the Control of Prostate Cancer MetastasisR01CA127923 · NCI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI KARIN, MICHAEL · 2007 to 2017
$2.8M
Network approaches to identify cancer drivers from high-dimensional tumor dataDP5OD017937 · OD · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI CARTER, HANNAH KATHRYN · 2013 to 2017
$1.9M
The Role of IL-17 in Alcoholic Liver Disease and CancerU01AA022614 · NIAAA · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI KARIN, MICHAEL, KISSELEVA, TATIANA · 2014 to 2018
$1.8M
Development of mosaic mouse models of HCC for genetic interspecies inferenceR00CA191152 · NCI · RESEARCH INST OF FOX CHASE CAN CTR · PI FONT-BURGADA, JOAN · 2017 to 2019
$747k
NCI NIH HHS P30 CA023100NCI NIH HHS R00 CA191152NCI NIH HHS R01 CA118165NCI NIH HHS R01 CA127923NIAAA NIH HHS U01 AA022614NIAID NIH HHS R01 AI043477NIAID NIH HHS R37 AI043477NIDDK NIH HHS R01 DK085252NIEHS NIH HHS P42 ES010337NIH HHS DP5 OD017937NLM NIH HHS T15 LM011271
6 · The paper itself

Abstract

Cancer genomics has enabled the exhaustive molecular characterization of tumors and exposed hepatocellular carcinoma (HCC) as among the most complex cancers. This complexity is paralleled by dozens of mouse models that generate histologically similar tumors but have not been systematically validated at the molecular level. Accurate models of the molecular pathogenesis of HCC are essential for biomedical progress; therefore we compared genomic and transcriptomic profiles of four separate mouse models [MUP transgenic, TAK1-knockout, carcinogen-driven diethylnitrosamine (DEN), and Stelic Animal Model (STAM)] with those of 987 HCC patients with distinct etiologies. These four models differed substantially in their mutational load, mutational signatures, affected genes and pathways, and transcriptomes. STAM tumors were most molecularly similar to human HCC, with frequent mutations in

Indexed as

Gene Expression ProfilingAnimalsBiomarkers, TumorCarcinoma, HepatocellularDisease Models, AnimalGenomicsHumansLiver NeoplasmsLiver Neoplasms, ExperimentalMiceMice, Inbred C57BLTranscriptomeBiomarkers, Tumorcancer mutational landscapescomparative genomicshepatocellular carcinomaimmune analysismouse models

Identifiers

PMID30287485
PMCPMC6196518
OpenAlexW2895318058

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.