Evidence map›Paper›PMID 30286802›Full record

ArticleParasites & vectors2018

Multiple paralogues of α-SNAP in Giardia lamblia exhibit independent subcellular localization and redistribution during encystation and stress.

Shankari Prasad Datta, Kuladip Jana, Avisek Mondal, Sandipan Ganguly, Srimonti Sarkar

Open access · goldAbstract read
In one paragraph

Article in Parasites & vectors, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.5field-weighted citation impact, top 38% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 9 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 2 countries.

Shankari Prasad DattaDepartment of Biochemistry, Bose Institute, P 1/12 CIT Road Scheme VII M, Kolkata, West Bengal, 700054, India.
Kuladip JanaDivision of Molecular Medicine, Bose Institute, P 1/12 CIT Road Scheme VII M, Kolkata, West Bengal, 700054, India.
Avisek MondalDepartment of Biochemistry, Bose Institute, P 1/12 CIT Road Scheme VII M, Kolkata, West Bengal, 700054, India.
Sandipan GangulyDivision of Parasitology, National Institute of Cholera and Enteric Diseases, P-33, CIT Road, Scheme XM, Beliaghata, Kolkata, West Bengal, 700010, India.
Srimonti SarkarDepartment of Biochemistry, Bose Institute, P 1/12 CIT Road Scheme VII M, Kolkata, West Bengal, 700054, India. srimonti@jcbose.ac.in.ORCID http://orcid.org/0000-0002-5058-1208
Bose Institute · INNational Institute of Cholera and Enteric Diseases · IN

Funding

Department of Science and Technology, Government of West Bengal (IN) IF120153
6 · The paper itself

Abstract

backgroundThe differently-diverged parasitic protist Giardia lamblia is known to have minimal machinery for vesicular transport. Yet, it has three paralogues of SNAP, a crucial component that together with NSF brings about disassembly of the cis-SNARE complex formed following vesicle fusion to target membranes. Given that most opisthokont hosts of this gut parasite express only one α-SNAP, this study was undertaken to determine whether these giardial SNAP proteins have undergone functional divergence.

resultsAll three SNAP paralogues are expressed in trophozoites, encysting trophozoites and cysts. Even though one of them clusters with γ-SNAP sequences in a phylogenetic tree, functional complementation analysis in yeast indicates that all the three proteins are functionally orthologous to α-SNAP. Localization studies showed a mostly non-overlapping distribution of these α-SNAPs in trophozoites, encysting cells and cysts. In addition, two of the paralogues exhibit substantial subcellular redistribution during encystation, which was also seen following exposure to oxidative stress. However, the expression of the three genes remained unchanged during this redistribution process. There is also a difference in the affinity of each of these α-SNAP paralogues for GlNSF.

conclusionsNone of the genes encoding the three α-SNAPs are pseudogenes and the encoded proteins are likely to discharge non-redundant functions in the different morphological states of G. lamblia. Based on the difference in the interaction of individual α-SNAPs with GlNSF and their non-overlapping pattern of subcellular redistribution during encystation and under stress conditions, it may be concluded that the three giardial α-SNAP paralogues have undergone functional divergence. Presence of one of the giardial α-SNAPs at the PDRs of flagella, where neither GlNSF nor any of the SNAREs localize, indicates that this α-SNAP discharges a SNARE-independent role in this gut pathogen.

Indexed as

Amino Acid SequenceCell CompartmentationEndosomesGene DuplicationGenetic Complementation TestGiardia lambliaModels, MolecularParasite EncystmentPhylogenyProtozoan ProteinsSaccharomyces cerevisiaeSoluble N-Ethylmaleimide-Sensitive Factor Attachment ProteinsStress, PhysiologicalTrophozoitesProtozoan ProteinsSoluble N-Ethylmaleimide-Sensitive Factor Attachment ProteinsEncystationFunctional divergenceGene duplicationNSFOxidative stressSNAREα-SNAP

Identifiers

PMID30286802
PMCPMC6172762
OpenAlexW2895205845

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.