Evidence map›Paper›PMID 30286719›Full record

ArticleBMC plant biology2018

Rice stripe virus-derived siRNAs play different regulatory roles in rice and in the insect vector Laodelphax striatellus.

Meiling Yang, Zhongtian Xu, Wan Zhao, Qing Liu, Qiong Li, Lu Lu, Renyi Liu, Xiaoming Zhang, Feng Cui

Open access · goldAbstract read
In one paragraph

Article in BMC plant biology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed
6.8field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed, 44 citations in OpenAlex.

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  6. A plant virus manipulates the long-winged morph of insect vectors.Proceedings of the National Academy of Sciences of the United States of America · 2024
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  11. CRISPR/Cas9-mediated gene editing ofFrontiers in plant science · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 1 country.

Meiling YangState Key Laboratory of Integrated Management of Pest Insects and Rodents, Institute of Zoology, Chinese Academy of Sciences, Bei Chen Xi Lu 1-5, Beijing, 100101, China.
Zhongtian XuShanghai Center for Plant Stress Biology, Chinese Academy of Sciences, Shanghai, 201602, China.
Wan ZhaoState Key Laboratory of Integrated Management of Pest Insects and Rodents, Institute of Zoology, Chinese Academy of Sciences, Bei Chen Xi Lu 1-5, Beijing, 100101, China.
Qing LiuState Key Laboratory of Integrated Management of Pest Insects and Rodents, Institute of Zoology, Chinese Academy of Sciences, Bei Chen Xi Lu 1-5, Beijing, 100101, China.
Qiong LiState Key Laboratory of Integrated Management of Pest Insects and Rodents, Institute of Zoology, Chinese Academy of Sciences, Bei Chen Xi Lu 1-5, Beijing, 100101, China.
Lu LuState Key Laboratory of Integrated Management of Pest Insects and Rodents, Institute of Zoology, Chinese Academy of Sciences, Bei Chen Xi Lu 1-5, Beijing, 100101, China.
Renyi LiuCenter for Agroforestry Mega Data Science and FAFU-UCR Joint Center for Horticultural Biology and Metabolomics, Haixia Institute of Science and Technology, Fujian Agriculture and Forestry University, Fuzhou, 350002, China. ryliu@fafu.edu.cn.
Xiaoming ZhangState Key Laboratory of Integrated Management of Pest Insects and Rodents, Institute of Zoology, Chinese Academy of Sciences, Bei Chen Xi Lu 1-5, Beijing, 100101, China. zhangxm@ioz.ac.cn.
Feng CuiState Key Laboratory of Integrated Management of Pest Insects and Rodents, Institute of Zoology, Chinese Academy of Sciences, Bei Chen Xi Lu 1-5, Beijing, 100101, China. cuif@ioz.ac.cn.
Institute of Zoology · CNChinese Academy of Sciences · CNUniversity of Chinese Academy of Sciences · CNFujian Agriculture and Forestry University · CN

Funding

Ministry of Agriculture transgenic major projects 2016ZX08010001National Key Plan for Scientific Research and Development of China 2017YFD0200406, 2016YFC1200603, 2017YFD0200904Natural Science Foundation of China NSFC 91540116, 31772162, 31472051, 31471782Open Research Fund Program of State Key Laboratory of Integrated Management of Pest Insects and Rodents Chinese IPM 1801, Chinese IPM 1605Strategic Priority Research Program of the Chinese Academy of Sciences (CAS) XDB11040000, XDB11050000
6 · The paper itself

Abstract

backgroundMost plant viruses depend on vector insects for transmission. Upon viral infection, virus-derived small interfering RNAs (vsiRNAs) can target both viral and host transcripts. Rice stripe virus (RSV) is a persistent-propagative virus transmitted by the small brown planthopper (Laodelphax striatellus, Fallen) and can cause a severe disease on rice.

resultsTo investigate how vsiRNAs regulate gene expressions in the host plant and the insect vector, we analyzed the expression profiles of small RNAs (sRNAs) and mRNAs in RSV-infected rice and RSV-infected planthopper. We obtained 88,247 vsiRNAs in rice that were predominantly derived from the terminal regions of the RSV RNA segments, and 351,655 vsiRNAs in planthopper that displayed relatively even distributions on RSV RNA segments. 38,112 and 80,698 unique vsiRNAs were found only in rice and planthopper, respectively, while 14,006 unique vsiRNAs were found in both of them. Compared to mock-inoculated rice, 273 genes were significantly down-regulated genes (DRGs) in RSV-infected rice, among which 192 (70.3%) were potential targets of vsiRNAs based on sequence complementarity. Gene ontology (GO) analysis revealed that these 192 DRGs were enriched in genes involved in kinase activity, carbohydrate binding and protein binding. Similarly, 265 DRGs were identified in RSV-infected planthoppers, among which 126 (47.5%) were potential targets of vsiRNAs. These planthopper target genes were enriched in genes that are involved in structural constituent of cuticle, serine-type endopeptidase activity, and oxidoreductase activity.

conclusionsTaken together, our results reveal that infection by the same virus can generate distinct vsiRNAs in different hosts to potentially regulate different biological processes, thus reflecting distinct virus-host interactions.

Indexed as

AnimalsGene Expression Regulation, PlantGene OntologyHemipteraHost-Pathogen InteractionsInsect ProteinsInsect VectorsOryzaPlant DiseasesPlant ProteinsRNA, Small InterferingRNA, ViralTenuivirusInsect ProteinsPlant ProteinsRNA, Small InterferingRNA, ViralRiceRice stripe virusSmall brown planthopperSmall RNA sequencingTranscriptomeVirus-derived small interfering RNAs

Identifiers

PMID30286719
PMCPMC6172784
OpenAlexW2895081950

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.