Evidence map›Paper›PMID 30285843›Full record

ArticleBMC research notes2018

Draft genome sequence of Staphylococcus sp. EZ-P03 isolated from a mesophilic anaerobic digester.

Elvira E Ziganshina, Waleed S Mohammed, Elena I Shagimardanova, Leyla H Shigapova, Ayrat M Ziganshin

Abstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in BMC research notes, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Elvira E ZiganshinaDepartment of Microbiology, Institute of Fundamental Medicine and Biology Kazan (Volga Region), Federal University, Kremlyovskaya STR. 18, Kazan, 420008, Russia.
Waleed S MohammedDepartment of Microbiology, Institute of Fundamental Medicine and Biology Kazan (Volga Region), Federal University, Kremlyovskaya STR. 18, Kazan, 420008, Russia.
Elena I ShagimardanovaLaboratory of Extreme Biology, Institute of Fundamental Medicine and Biology Kazan (Volga Region), Federal University, Kazan, 420021, Russia.
Leyla H ShigapovaLaboratory of Extreme Biology, Institute of Fundamental Medicine and Biology Kazan (Volga Region), Federal University, Kazan, 420021, Russia.
Ayrat M ZiganshinDepartment of Microbiology, Institute of Fundamental Medicine and Biology Kazan (Volga Region), Federal University, Kremlyovskaya STR. 18, Kazan, 420008, Russia. ayrat.ziganshin@kpfu.ru.ORCID http://orcid.org/0000-0001-6296-8955

Funding

Russian Foundation for Basic Research 16-34-60093
6 · The paper itself

Abstract

objectivesStaphylococcus species of the family Staphylococcaceae are facultatively anaerobic Gram-positive cocci growing in clusters, pairs and occasionally in short chains. Staphylococci can be detected in different environments. They are common commensals, but some can also cause infections in humans. Hence, their investigation is required to understand ecology and genetics and to create an opportunity for comparative studies. DATA DESCRIPTION: In this study, we report the determination of a draft genome sequence of Staphylococcus sp. strain EZ-P03 which was isolated from anaerobically digested chicken waste materials. The draft genome of Staphylococcus sp. EZ-P03 constituted a total of 62 contigs (> 500 bp) amounting to 2,689,358 bp with a G+C content of 37.3% and a N50 contig size of 126,562 bp. The whole genome shotgun project of Staphylococcus sp. strain EZ-P03 has been deposited at DDBJ/ENA/GenBank under the accession number QPMO00000000.

Indexed as

BacillotaAnimalsChickensDatabases, GeneticDNA, BacterialGenome, BacterialManureRNA, Ribosomal, 16SStaphylococcusDNA, BacterialManureRNA, Ribosomal, 16SChicken manureDraft genomeFirmicutesLaboratory-scale mesophilic reactorStaphylococcus sp.

Identifiers

PMID30285843
PMCPMC6171152

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.