Evidence map›Paper›PMID 30285698›Full record

ArticleBMC plant biology2018

Identification of key genes involved in the phenotypic alterations of res (restored cell structure by salinity) tomato mutant and its recovery induced by salt stress through transcriptomic analysis.

Irene Albaladejo, Isabel Egea, Belen Morales, Francisco B Flores, Carmen Capel, Rafael Lozano, Maria C Bolarin

Open access · goldAbstract read
In one paragraph

Article in BMC plant biology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
2.4field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 19 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Irene AlbaladejoDepartamento de Biología del Estrés y Patología Vegetal, Centro de Edafología y Biología Aplicada del Segura, CSIC, Campus Universitario Espinardo, 30100, Murcia, Spain.
Isabel EgeaDepartamento de Biología del Estrés y Patología Vegetal, Centro de Edafología y Biología Aplicada del Segura, CSIC, Campus Universitario Espinardo, 30100, Murcia, Spain. iegea@cebas.csic.es.ORCID http://orcid.org/0000-0002-1248-0297
Belen MoralesDepartamento de Biología del Estrés y Patología Vegetal, Centro de Edafología y Biología Aplicada del Segura, CSIC, Campus Universitario Espinardo, 30100, Murcia, Spain.
Francisco B FloresDepartamento de Biología del Estrés y Patología Vegetal, Centro de Edafología y Biología Aplicada del Segura, CSIC, Campus Universitario Espinardo, 30100, Murcia, Spain.
Carmen CapelCentro de Investigación en Biotecnología Agroalimentaria (BITAL), Universidad de Almería, 04120, Almería, Spain.
Rafael LozanoCentro de Investigación en Biotecnología Agroalimentaria (BITAL), Universidad de Almería, 04120, Almería, Spain.
Maria C BolarinDepartamento de Biología del Estrés y Patología Vegetal, Centro de Edafología y Biología Aplicada del Segura, CSIC, Campus Universitario Espinardo, 30100, Murcia, Spain.
Centro de Edafología y Biología Aplicada del Segura · ESUniversity of Almería · ES

Funding

Consejo Superior de Investigaciones Científicas Code TC0000100 from CSIC Open Access Publication Support Initiative, Unit of Information Resources for Research (URICI)Ministerio de Economía y Competitividad AGL2015-64991-C3-1-RMinisterio de Economía y Competitividad AGL2015-64991-C3-2-R
6 · The paper itself

Abstract

backgroundThe res (restored cell structure by salinity) mutant, recently identified as the first tomato mutant accumulating jasmonate in roots under non-stressful conditions, exhibits a remarkable growth inhibition and morphological alterations in roots and leaves, which are suppressed when the mutant plants are exposed to salinity. In order to understand the molecular basis of the phenotype recovery induced by salt stress in the res mutant, we carried out a comparative transcriptomic analysis in roots and leaves of wild-type and res plants in absence of stress (control) and when the phenotypic recovery of res mutant began to be observed upon salt stress (5 days of 200 mM NaCl).

resultsThe number of differentially expressed genes was three times greater in roots than in leaves of res vs WT plants grown in control, and included the down-regulation of growth-promoting genes and the up-regulation of genes involved in Ca

conclusionsIn summary, in this study we have identified genes which seem to have a prominent role in salt tolerance. Moreover, we think this work could contribute to future breeding of tomato crops with increased stress tolerance.

Indexed as

Gene Expression ProfilingGene Expression Regulation, PlantMutationPhenotypePhotosynthesisPlant CellsPlant Growth RegulatorsPlant ProteinsReproducibility of ResultsSalinitySalt ToleranceSignal TransductionSodium ChlorideSolanum lycopersicumTranscription FactorsPlant Growth RegulatorsPlant ProteinsSodium ChlorideTranscription FactorsGrowth-defence tradeoffMicroarraysres mutantSalt stressSolanum lycopersicum

Identifiers

PMID30285698
PMCPMC6167845
OpenAlexW2893944450

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.