Evidence map›Paper›PMID 30285618›Full record

ArticleBMC plant biology2018

A Lotus japonicus E3 ligase interacts with the Nod Factor Receptor 5 and positively regulates nodulation.

Daniela Tsikou, Estrella E Ramirez, Ioanna S Psarrakou, Jaslyn E Wong, Dorthe B Jensen, Erika Isono, Simona Radutoiu, Kalliope K Papadopoulou

Open access · goldAbstract read
In one paragraph

Article in BMC plant biology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
2.0field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 15 citations in OpenAlex.

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  9. TheFrontiers in plant science · 2020
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 3 countries.

Daniela TsikouDepartment of Biochemistry and Biotechnology, University of Thessaly, Biopolis, 41500, Larisa, Greece.
Estrella E RamirezDepartment of Molecular Biology and Genetics, Aarhus University, Gustav Wieds Vej, 8000 C, Aarhus, Denmark.
Ioanna S PsarrakouDepartment of Biochemistry and Biotechnology, University of Thessaly, Biopolis, 41500, Larisa, Greece.
Jaslyn E WongDepartment of Molecular Biology and Genetics, Aarhus University, Gustav Wieds Vej, 8000 C, Aarhus, Denmark.
Dorthe B JensenDepartment of Molecular Biology and Genetics, Aarhus University, Gustav Wieds Vej, 8000 C, Aarhus, Denmark.
Erika IsonoDepartment of Plant Systems Biology, Technical University of Munich, Emil-Ramann-Strabe 4, Freising, Germany.
Simona RadutoiuDepartment of Molecular Biology and Genetics, Aarhus University, Gustav Wieds Vej, 8000 C, Aarhus, Denmark. radutoiu@mbg.au.dk.
Kalliope K PapadopoulouDepartment of Biochemistry and Biotechnology, University of Thessaly, Biopolis, 41500, Larisa, Greece. kalpapad@bio.uth.gr.ORCID http://orcid.org/0000-0001-7731-1825
Aarhus University · DKUniversity of Thessaly · GRTechnical University of Munich · DE

Funding

Danmarks Grundforskningsfond DNRF79Department of Biochemistry and Biotechnology 3817European Cooperation in Science and Technology 290713-031130
6 · The paper itself

Abstract

backgroundPost-translational modification of receptor proteins is involved in activation and de-activation of signalling systems in plants. Both ubiquitination and deubiquitination have been implicated in plant interactions with pathogens and symbionts.

resultsHere we present LjPUB13, a PUB-ARMADILLO repeat E3 ligase that specifically ubiquitinates the kinase domain of the Nod Factor receptor NFR5 and has a direct role in nodule organogenesis events in Lotus japonicus. Phenotypic analyses of three LORE1 retroelement insertion plant lines revealed that pub13 plants display delayed and reduced nodulation capacity and retarded growth. LjPUB13 expression is spatially regulated during symbiosis with Mesorhizobium loti, with increased levels in young developing nodules.

conclusionLjPUB13 is an E3 ligase with a positive regulatory role during the initial stages of nodulation in L. japonicus.

Indexed as

Gene Expression Regulation, PlantLotusMesorhizobiumMutationPlant ProteinsPlant Root NodulationPlants, Genetically ModifiedProtein Serine-Threonine KinasesRoot Nodules, PlantSymbiosisUbiquitinationUbiquitin-Protein LigasesPlant ProteinsProtein Serine-Threonine KinasesUbiquitin-Protein LigasesE3 ligaseLotus japonicusNodulationPUB13SymbiosisUbiquitination

Identifiers

PMID30285618
PMCPMC6171183
OpenAlexW2951020544

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.