Evidence map›Paper›PMID 30285306›Full record

ArticleProteomics2018

Critical Role for Saccharomyces cerevisiae Asc1p in Translational Initiation at Elevated Temperatures.

Vincent R Gerbasi, Christopher M Browne, Parimal Samir, Bingxin Shen, Ming Sun, Dane Z Hazelbaker, Allison C Galassie, Joachim Frank, Andrew J Link

Abstract read
In one paragraph

Article in Proteomics, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.2field-weighted citation impact, top 46% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 6 citations in OpenAlex.

  1. Article
  2. Review
  3. The Proteomic Analysis of Cancer-Related Alterations in the Human Unfoldome.International journal of molecular sciences · 2024
    Article
  4. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 5 institutions in 1 country.

Vincent R GerbasiDepartment of Pathology, Microbiology and Immunology, School of Medicine, Vanderbilt University, Nashville, TN, 37232, USA.ORCID 0000-0001-5573-0578
Christopher M BrowneDepartment of Biochemistry, School of Medicine, Vanderbilt University, Nashville, TN, 37232, USA.
Parimal SamirDepartment of Biochemistry, School of Medicine, Vanderbilt University, Nashville, TN, 37232, USA.
Bingxin ShenDepartment of Biochemistry and Molecular Biophysics, Howard Hughes Medical Institute, Columbia University, New York, NY, 10032, USA.
Ming SunDepartment of Biological Sciences, Columbia University, New York, NY, 10027, USA.
Dane Z HazelbakerDepartment of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA, 02115, USA.
Allison C GalassieDepartment of Chemistry, Vanderbilt University, Nashville, TN, 37235, USA.ORCID 0000-0001-8030-8774
Joachim FrankDepartment of Biochemistry and Molecular Biophysics, Howard Hughes Medical Institute, Columbia University, New York, NY, 10032, USA.
Andrew J LinkDepartment of Pathology, Microbiology and Immunology, School of Medicine, Vanderbilt University, Nashville, TN, 37232, USA.
Vanderbilt University · USHoward Hughes Medical Institute · USColumbia University · USHarvard University · USNorthwestern University · US

Funding

Immunobiology of Blood and Vascular Systems Training ProgramT32HL069765 · NHLBI · VANDERBILT UNIVERSITY · PI HAWIGER, JACK J · 2002 to 2016
$6.5M
STRUCTURE ANALYSIS OF MACROMOLECULAR ASSEMBLIESR01GM029169 · NIGMS · WADSWORTH CENTER · PI FRANK, JOACHIM · 1985 to 2019
$6.1M
Proteomic Analysis of Eukaryotic Protein SynthesisR01GM064779 · NIGMS · VANDERBILT UNIVERSITY · PI LINK, ANDREW J. · 2002 to 2010
$3.0M
STRUCTURAL ANALYSIS OF MACROMOLECULAR ASSEMBLYR37GM029169 · NIGMS · WADSWORTH CENTER · PI FRANK, JOACHIM · 1997 to 2006
$2.8M
CELLULAR AND MOLECULAR MICROBIOLOGY TRAINING PROGRAMT32AI007611 · NIAID · VANDERBILT UNIVERSITY · PI HAWIGER, JACK J · 1999 to 2010
$1.6M
LTQ Orbitrap Hybrid FT Mass Spectrometry System for Proteomic AnalysisS10RR024610 · NCRR · VANDERBILT UNIVERSITY · PI LINK, ANDREW J. · 2009 to 2009
$500k
Howard Hughes Medical InstituteNCRR NIH HHS S10 RR024610NHLBI NIH HHS 5T32HL069765NHLBI NIH HHS T32 HL069765NIAID NIH HHS T32 AI007611NIGMS NIH HHS GM29169NIGMS NIH HHS GM64779NIGMS NIH HHS R01 GM029169NIGMS NIH HHS R01 GM064779NIGMS NIH HHS R37 GM029169
6 · The paper itself

Abstract

The eukaryotic ribosomal protein RACK1/Asc1p is localized to the mRNA exit channel of the 40S subunit but lacks a defined role in mRNA translation. Saccharomyces cerevisiae deficient in ASC1 exhibit temperature-sensitive growth. Using this null mutant, potential roles for Asc1p in translation and ribosome biogenesis are evaluated. At the restrictive temperature the asc1Δ null mutant has reduced polyribosomes. To test the role of Asc1p in ribosome stability, cryo-EM is used to examine the structure of 80S ribosomes in an asc1Δ yeast deletion mutant at both the permissive and nonpermissive temperatures. CryoEM indicates that loss of Asc1p does not severely disrupt formation of this complex structure. No defect is found in rRNA processing in the asc1Δ null mutant. A proteomic approach is applied to survey the effect of Asc1p loss on the global translation of yeast proteins. At the nonpermissive temperature, the asc1Δ mutant has reduced levels of ribosomal proteins and other factors critical for translation. Collectively, these results are consistent with recent observations suggesting that Asc1p is important for ribosome occupancy of short mRNAs. The results show the Asc1 ribosomal protein is critical in translation during heat stress.

Indexed as

Adaptor Proteins, Signal TransducingGTP-Binding ProteinsHeat-Shock ResponseProtein BindingProtein BiosynthesisRibosomesSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsTemperatureAdaptor Proteins, Signal TransducingASC1 protein, S cerevisiaeGTP-Binding ProteinsSaccharomyces cerevisiae ProteinsASC1initiationribosometranslationyeast

Identifiers

PMID30285306
PMCPMC6461043
OpenAlexW2894910344

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.