Evidence map›Paper›PMID 30282808›Full record

ArticleThe Journal of biological chemistry2018

Endo-fucoidan hydrolases from glycoside hydrolase family 107 (GH107) display structural and mechanistic similarities to α-l-fucosidases from GH29.

Chelsea Vickers, Feng Liu, Kento Abe, Orly Salama-Alber, Meredith Jenkins, Christopher M K Springate, John E Burke, Stephen G Withers, Alisdair B Boraston

Abstract read
In one paragraph

Article in The Journal of biological chemistry, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Journal of the American Society for Mass Spectrometry · 2025
    Article
  5. Review
  6. Article
  7. Review
  8. Article
  9. Review
  10. Automated Synthesis of Algal Fucoidan Oligosaccharides.Journal of the American Chemical Society · 2024
    Article
  11. Article
  12. Article
  13. Article
  14. Review
  15. Review
  16. Article
  17. Review
  18. Article
  19. Standard Candles for Dating Microbial Lineages.Methods in molecular biology (Clifton, N.J.) · 2022
    Article
  20. The Endo-α(1,4) Specific Fucoidanase Fhf2 FromFrontiers in plant science · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Chelsea VickersFrom the Department of Biochemistry and Microbiology, University of Victoria, Victoria, British Columbia 8W 3P6, Canada.
Feng Liuthe Department of Chemistry, University of British Columbia, Vancouver, British Columbia V6T 1Z1, Canada, and.
Kento AbeFrom the Department of Biochemistry and Microbiology, University of Victoria, Victoria, British Columbia 8W 3P6, Canada.
Orly Salama-AlberFrom the Department of Biochemistry and Microbiology, University of Victoria, Victoria, British Columbia 8W 3P6, Canada.
Meredith JenkinsFrom the Department of Biochemistry and Microbiology, University of Victoria, Victoria, British Columbia 8W 3P6, Canada.
Christopher M K SpringateARC Medical Devices Inc., Richmond, British Columbia V6X 2T4, Canada.
John E BurkeFrom the Department of Biochemistry and Microbiology, University of Victoria, Victoria, British Columbia 8W 3P6, Canada.
Stephen G Withersthe Department of Chemistry, University of British Columbia, Vancouver, British Columbia V6T 1Z1, Canada, and.
Alisdair B BorastonFrom the Department of Biochemistry and Microbiology, University of Victoria, Victoria, British Columbia 8W 3P6, Canada,. Electronic address: boraston@uvic.ca.

Funding

ZWITTERION SURFACTANT DDMAB FOR IMPROV STABIL OF PROTEINP41RR001209 · NCRR · STANFORD UNIVERSITY · PI GONZALEZ, ANA M · 1985 to 2011
$38.9M
NCRR NIH HHS P41 RR001209
6 · The paper itself

Abstract

Fucoidans are chemically complex and highly heterogeneous sulfated marine fucans from brown macro algae. Possessing a variety of physicochemical and biological activities, fucoidans are used as gelling and thickening agents in the food industry and have anticoagulant, antiviral, antitumor, antibacterial, and immune activities. Although fucoidan-depolymerizing enzymes have been identified, the molecular basis of their activity on these chemically complex polysaccharides remains largely uninvestigated. In this study, we focused on three glycoside hydrolase family 107 (GH107) enzymes: MfFcnA and two newly identified members, P5AFcnA and P19DFcnA, from a bacterial species of the genus

Indexed as

alpha-L-FucosidaseBacterial ProteinsCatalysisCatalytic DomainCrystallography, X-RayGammaproteobacteriaGlycoside HydrolasesModels, MolecularMultigene FamilyPolysaccharidesSubstrate Specificityalpha-L-FucosidaseBacterial ProteinsfucoidanGlycoside HydrolasesPolysaccharidesenzymeenzyme catalysisenzyme mechanismglycoside hydrolasepolysaccharideX-ray crystallography

Identifiers

PMID30282808
PMCPMC6254363

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.