Evidence map›Paper›PMID 30282735›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2018

The ReFRAME library as a comprehensive drug repurposing library and its application to the treatment of cryptosporidiosis.

Jeff Janes, Megan E Young, Emily Chen, Nicole H Rogers, Sebastian Burgstaller-Muehlbacher, Laura D Hughes, Melissa S Love, Mitchell V Hull, Kelli L Kuhen, Ashley K Woods and 7 more

Expression of concernOpen access · hybridAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It carries an expression of concern. Cited by 127 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
127citing papers in PubMed, 1 pooled it
17.6field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

127 citing papers in PubMed, 1 synthesis or guideline pooled it, 220 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. AI-driven drug design: a comprehensive review.Journal of computer-aided molecular design · 2026
    Review
  5. Article
  6. Article
  7. A Novel Method to Silence Genes in Cryptosporidium.Methods in molecular biology (Clifton, N.J.) · 2026
    Article
  8. Article
  9. Article
  10. Frontiers in cellular and infection microbiology · 2026
    Article
  11. Article
  12. Molecular biology of the cell · 2025
    Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article

67 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

17 authors at 2 institutions in 1 country.

Jeff JanesCalifornia Institute for Biomedical Research, La Jolla, CA 92037.
Megan E YoungCalifornia Institute for Biomedical Research, La Jolla, CA 92037.
Emily ChenCalifornia Institute for Biomedical Research, La Jolla, CA 92037.
Nicole H RogersCalifornia Institute for Biomedical Research, La Jolla, CA 92037.
Sebastian Burgstaller-MuehlbacherDepartment of Integrative, Structural and Computational Biology, The Scripps Research Institute, La Jolla, CA 92037.
Laura D HughesDepartment of Integrative, Structural and Computational Biology, The Scripps Research Institute, La Jolla, CA 92037.
Melissa S LoveCalifornia Institute for Biomedical Research, La Jolla, CA 92037.
Mitchell V HullCalifornia Institute for Biomedical Research, La Jolla, CA 92037.
Kelli L KuhenCalifornia Institute for Biomedical Research, La Jolla, CA 92037.
Ashley K WoodsCalifornia Institute for Biomedical Research, La Jolla, CA 92037.
Sean B JosephCalifornia Institute for Biomedical Research, La Jolla, CA 92037.
H Michael PetrassiCalifornia Institute for Biomedical Research, La Jolla, CA 92037.
Case W McNamaraCalifornia Institute for Biomedical Research, La Jolla, CA 92037.
Matthew S TremblayCalifornia Institute for Biomedical Research, La Jolla, CA 92037.
Andrew I SuDepartment of Integrative, Structural and Computational Biology, The Scripps Research Institute, La Jolla, CA 92037.
Peter G SchultzCalifornia Institute for Biomedical Research, La Jolla, CA 92037; schultz@calibr.org achatterjee@calibr.org.
Arnab K ChatterjeeCalifornia Institute for Biomedical Research, La Jolla, CA 92037; schultz@calibr.org achatterjee@calibr.org.ORCID 0000-0001-5171-7982
California Institute for Biomedical Research · USScripps Research Institute · US

Funding

The Gene Wiki: Community intelligence applied to gene annotationR01GM089820 · NIGMS · SCRIPPS RESEARCH INSTITUTE, THE · PI SU, ANDREW I · 2010 to 2021
$5.2M
NIGMS NIH HHS R01 GM089820
6 · The paper itself

Abstract

The chemical diversity and known safety profiles of drugs previously tested in humans make them a valuable set of compounds to explore potential therapeutic utility in indications outside those originally targeted, especially neglected tropical diseases. This practice of "drug repurposing" has become commonplace in academic and other nonprofit drug-discovery efforts, with the appeal that significantly less time and resources are required to advance a candidate into the clinic. Here, we report a comprehensive open-access, drug repositioning screening set of 12,000 compounds (termed ReFRAME; Repurposing, Focused Rescue, and Accelerated Medchem) that was assembled by combining three widely used commercial drug competitive intelligence databases (Clarivate Integrity, GVK Excelra GoStar, and Citeline Pharmaprojects), together with extensive patent mining of small molecules that have been dosed in humans. To date, 12,000 compounds (∼80% of compounds identified from data mining) have been purchased or synthesized and subsequently plated for screening. To exemplify its utility, this collection was screened against

Indexed as

Databases, PharmaceuticalDrug DiscoveryAnimalsAntiprotozoal AgentsCryptosporidiosisCryptosporidiumDrug Evaluation, PreclinicalDrug RepositioningFemaleHigh-Throughput Screening AssaysHumansMiceMice, Inbred C57BLSmall Molecule LibrariesAntiprotozoal AgentsSmall Molecule LibrariesCryptosporidiumdrug discoverydrug repositioningneglected tropical diseasesphenotypic screening

Identifiers

PMID30282735
PMCPMC6196526
OpenAlexW2894600215

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.