Evidence map›Paper›PMID 30281872›Full record

ArticleCancer science2018

Functional intronic variant of SLC5A10 affects DRG2 expression and survival outcomes of early-stage non-small-cell lung cancer.

Mi Jeong Hong, Seung Soo Yoo, Jin Eun Choi, Hyo-Gyoung Kang, Sook Kyung Do, Jang Hyuck Lee, Won Kee Lee, Jaehee Lee, Shin Yup Lee, Seung Ick Cha and 5 more

Open access · goldAbstract read
In one paragraph

Article in Cancer science, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
0.6field-weighted citation impact, top 34% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 12 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. The association ofFrontiers in pharmacology · 2022
    Article
  6. Developmentally regulated GTPases: structure, function and roles in disease.Cellular and molecular life sciences : CMLS · 2021
    Review
  7. Article
  8. Article
  9. The effect of polymorphism in theArchives animal breeding · 2019
    Article
  10. Article
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 3 institutions in 3 countries.

Mi Jeong HongDepartment of Cell and Matrix Research Institute, School of Medicine, Kyungpook National University, Daegu, Korea.
Seung Soo YooDepartment of Internal Medicine, School of Medicine, Kyungpook National University, Kyungpook National University Hospital, Deagu, Korea.
Jin Eun ChoiDepartment of Cell and Matrix Research Institute, School of Medicine, Kyungpook National University, Daegu, Korea.
Hyo-Gyoung KangDepartment of Cell and Matrix Research Institute, School of Medicine, Kyungpook National University, Daegu, Korea.
Sook Kyung DoDepartment of Biochemistry and Cell Biology, School of Medicine, Kyungpook National University, Daegu, Korea.
Jang Hyuck LeeDepartment of Biochemistry and Cell Biology, School of Medicine, Kyungpook National University, Daegu, Korea.
Won Kee LeeBiostatistics Center, School of Medicine, Kyungpook National University, Daegu, Korea.
Jaehee LeeDepartment of Internal Medicine, School of Medicine, Kyungpook National University, Kyungpook National University Hospital, Deagu, Korea.
Shin Yup LeeDepartment of Internal Medicine, School of Medicine, Kyungpook National University, Kyungpook National University Hospital, Deagu, Korea.
Seung Ick ChaDepartment of Internal Medicine, School of Medicine, Kyungpook National University, Kyungpook National University Hospital, Deagu, Korea.
Chang Ho KimDepartment of Internal Medicine, School of Medicine, Kyungpook National University, Kyungpook National University Hospital, Deagu, Korea.
Eung Bae LeeDepartment of Thoracic Surgery, School of Medicine, Kyungpook National University, Daegu, Korea.
Sukki ChoDepartment of Thoracic and Cardiovascular Surgery, School of Medicine, Seoul National University, Seoul, Korea.
Sanghoon JheonDepartment of Thoracic and Cardiovascular Surgery, School of Medicine, Seoul National University, Seoul, Korea.
Jae Yong ParkDepartment of Cell and Matrix Research Institute, School of Medicine, Kyungpook National University, Daegu, Korea.ORCID http://orcid.org/0000-0001-7993-4495
Kyungpook National University Hospital · KRKyungpook National University · KRSeoul National University · KR

Funding

Ministry of Health & Welfare 1720040Ministry of Health & Welfare HI14C0402
6 · The paper itself

Abstract

RegulomeDB is a new tool that can predict the regulatory function of genetic variants. We applied RegulomeDB in selecting putative functional variants and evaluated the relationship between these variants and survival outcomes of surgically resected non-small-cell lung cancer. Among the 244 variants studied, 14 were associated with overall survival (P < 0.05) in the discovery cohort and one variant (rs2257609 C>T) was replicated in the validation cohort. In the combined analysis, rs2257609 C>T was significantly associated with worse overall and disease-free survival under a dominant model (P = 2 × 10

Indexed as

Polymorphism, Single NucleotideCarcinoma, Non-Small-Cell LungFemaleGene Expression ProfilingGene Expression Regulation, NeoplasticGenetic Association StudiesGenetic VariationGTP-Binding ProteinsHumansIntronsLung NeoplasmsMaleNeoplasm StagingPrognosisPromoter Regions, GeneticSodium-Glucose Transport ProteinsDRG2 protein, humanGTP-Binding ProteinsSLC5A10 protein, humanSodium-Glucose Transport Proteinsnon-small-cell lung cancerpolymorphismRegulomeDBrs2257609 C>Tsurvival outcome

Identifiers

PMID30281872
PMCPMC6272084
OpenAlexW2895291443

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.