Evidence map›Paper›PMID 30280650›Full record

ArticleJournal of veterinary diagnostic investigation : official publication of the American Association of Veterinary Laboratory Diagnosticians, Inc2018

Rapid differentiation of Staphylococcus aureus subspecies based on MALDI-TOF MS profiles.

Marta Pérez-Sancho, Ana I Vela, Pilar Horcajo, María Ugarte-Ruiz, Lucas Domínguez, José F Fernández-Garayzábal, Ricardo de la Fuente

Abstract read
In one paragraph

Article in Journal of veterinary diagnostic investigation : official publication of the American Association of Veterinary Laboratory Diagnosticians, Inc, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Review
  6. Rapid Detection of Carbapenem-ResistantInfection and drug resistance · 2022
    Article
  7. Article
  8. MALDI-TOF MS Biomarker Detection Models to Distinguish RTX Toxin Phenotypes ofFrontiers in cellular and infection microbiology · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Marta Pérez-SanchoVISAVET Health Surveillance Centre (Pérez-Sancho, Vela, Ugarte-Ruiz, Fernández-Garayzábal, Domínguez), Complutense University, Madrid, Spain.
Ana I VelaVISAVET Health Surveillance Centre (Pérez-Sancho, Vela, Ugarte-Ruiz, Fernández-Garayzábal, Domínguez), Complutense University, Madrid, Spain.ORCID https://orcid.org/0000-0001-5004-3103
Pilar HorcajoVISAVET Health Surveillance Centre (Pérez-Sancho, Vela, Ugarte-Ruiz, Fernández-Garayzábal, Domínguez), Complutense University, Madrid, Spain.
María Ugarte-RuizVISAVET Health Surveillance Centre (Pérez-Sancho, Vela, Ugarte-Ruiz, Fernández-Garayzábal, Domínguez), Complutense University, Madrid, Spain.
Lucas DomínguezVISAVET Health Surveillance Centre (Pérez-Sancho, Vela, Ugarte-Ruiz, Fernández-Garayzábal, Domínguez), Complutense University, Madrid, Spain.
José F Fernández-GarayzábalVISAVET Health Surveillance Centre (Pérez-Sancho, Vela, Ugarte-Ruiz, Fernández-Garayzábal, Domínguez), Complutense University, Madrid, Spain.
Ricardo de la FuenteVISAVET Health Surveillance Centre (Pérez-Sancho, Vela, Ugarte-Ruiz, Fernández-Garayzábal, Domínguez), Complutense University, Madrid, Spain.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Staphylococcus aureus encompasses 2 subspecies ( aureus and anaerobius) with significant differences in their epidemiology and pathogenicity. We evaluated the suitability of matrix-assisted laser desorption/ionization time-of-flight mass spectrometry (MALDI-TOF MS) for the rapid identification of both subspecies using a panel of 52 S. aureus isolates (30 subsp. anaerobius and 22 subsp. aureus) recovered from different origins, countries, and years. The on-board library identification system correctly identified 42 of 52 (81%) S. aureus isolates at the species level with score values >2.0. Limited performance was observed for differentiation of S. aureus subspecies (particularly subsp. anaerobius). Visual inspection of MALDI-TOF MS profiles identified 5 subspecies-specific mass peaks ( m/ z 3430 and 6861 in S. aureus subsp. anaerobius, and m/ z 4046, 6890, and 8093 in S. aureus subsp. aureus) with 100% sensitivity and specificity values, which is potentially useful for differentiating these subspecies. The suitability of 3 models, Genetic Analysis (GA), Quick Classifier (QC), and Supervised Neural Network, for automatic identification of both subspecies was evaluated using the Recognition Capability (RC) and Cross Validation (CV) values provided by the on-board ClinProTools software. The GA and QC models reached RC and CV values of 100%. Both models were externally validated using a panel of 26 S. aureus isolates of both subspecies, with both models correctly classifying all isolates of both subspecies. MALDI-TOF MS coupled with ClinProTools software represents a rapid and simple approach for S. aureus subspecies discrimination.

Indexed as

AnimalsGoat DiseasesGoatsSensitivity and SpecificitySheepSheep DiseasesSoftwareSpectrometry, Mass, Matrix-Assisted Laser Desorption-IonizationStaphylococcal InfectionsStaphylococcus aureusSwineSwine DiseasesMALDI-TOF MSStaphylococcus aureus subspecies

Identifiers

PMID30280650
PMCPMC6505833

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.