Evidence map›Paper›PMID 30279502›Full record

ArticleScientific reports2018

Sin3A recruits Tet1 to the PAH1 domain via a highly conserved Sin3-Interaction Domain.

Aditya Chandru, Neil Bate, Geerten W Vuister, Shaun M Cowley

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
1.3field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 35 citations in OpenAlex.

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  10. Melatonin: A Potential Regulator of DNA Methylation.Antioxidants (Basel, Switzerland) · 2023
    Review
  11. Review
  12. Article
  13. Article
  14. Article
  15. Mechanisms that regulate the activities of TET proteins.Cellular and molecular life sciences : CMLS · 2022
    Review
  16. Article
  17. TET1s deficiency exacerbates oscillatory shear flow-induced atherosclerosis.International journal of biological sciences · 2022
    Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Aditya ChandruDepartment of Molecular and Cell Biology, University of Leicester, Lancaster Road, Leicester, LE1 7RH, United Kingdom.
Neil BateDepartment of Molecular and Cell Biology, University of Leicester, Lancaster Road, Leicester, LE1 7RH, United Kingdom.
Geerten W VuisterDepartment of Molecular and Cell Biology, University of Leicester, Lancaster Road, Leicester, LE1 7RH, United Kingdom.
Shaun M CowleyDepartment of Molecular and Cell Biology, University of Leicester, Lancaster Road, Leicester, LE1 7RH, United Kingdom. smc57@le.ac.uk.
Leicester College · GBUniversity of Leicester · GB

Funding

Biotechnology and Biological Sciences Research Council (BBSRC) BB/J007897/1Biotechnology and Biological Sciences Research Council (BBSRC) BB/N002954/1Biotechnology and Biological Sciences Research Council (BBSRC) BB/P021689/1Medical Research Council MR/J009202/1Medical Research Council MR/L000555/1Medical Research Council MR/P00038X/1Medical Research Council (MRC) MR/J009202/1Medical Research Council (MRC) MR/P00038X/1
6 · The paper itself

Abstract

The Sin3A complex acts as a transcriptional hub, integrating the function of diverse transcription factors with histone modifying enzymes, notably, histone deacetylases (HDAC) 1 and 2. The Sin3A protein sits at the centre of the complex, mediating multiple simultaneous protein-protein interactions via its four paired-amphipathic helix (PAH) domains (PAH1-4). The PAH domains contain a conserved four helical bundle, generating a hydrophobic cleft into which the single-helix of a Sin3-interaction domain (SID) is able to insert and bind with high affinity. Although they share a similar mode of interaction, the SIDs of different repressor proteins bind to only one of four potential PAH domains, due to the specific combination of hydrophobic residues at the interface. Here we report the identification of a highly conserved SID in the 5-methylcytosine dioxygenase, Tet1 (Tet1-SID), which interacts directly with the PAH1 domain of Sin3A. Using a combination of NMR spectroscopy and homology modelling we present a model of the PAH1/Tet1-SID complex, which binds in a Type-II orientation similar to Sap25. Mutagenesis of key residues show that the 11-amino acid Tet1-SID is necessary and sufficient for the interaction with Sin3A and is absolutely required for Tet1 to repress transcription in cells.

Indexed as

Protein Interaction MappingAmino Acid SubstitutionDNA Mutational AnalysisHEK293 CellsHumansMagnetic Resonance SpectroscopyMixed Function OxygenasesModels, MolecularProtein BindingProtein ConformationProtein DomainsProto-Oncogene ProteinsRepressor ProteinsSin3 Histone Deacetylase and Corepressor ComplexMixed Function OxygenasesProto-Oncogene ProteinsRepressor ProteinsSIN3A transcription factorSin3 Histone Deacetylase and Corepressor ComplexTET1 protein, human

Identifiers

PMID30279502
PMCPMC6168491
OpenAlexW2892943554

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.