Evidence map›Paper›PMID 30276748›Full record

ReviewMethods in molecular biology (Clifton, N.J.)2019

Proteases: Pivot Points in Functional Proteomics.

Ingrid M Verhamme, Sarah E Leonard, Ray C Perkins

Abstract readReview
In one paragraph

Review in Methods in molecular biology (Clifton, N.J.), 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Detection ofJournal of advanced veterinary and animal research · 2023
    Article
  8. A Brief History of Glandular Therapy: More Than Just Thyroid.Integrative medicine (Encinitas, Calif.) · 2023
    Review
  9. Article
  10. Article
  11. Review
  12. Article
  13. Article
  14. Article
  15. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Ingrid M VerhammeDepartment of Pathology, Microbiology and Immunology, Vanderbilt University School of Medicine, Nashville, TN, USA. Ingrid.verhamme@vanderbilt.edu.
Sarah E LeonardChemical and Biomolecular Engineering, University of Illinois Champaign-Urbana School of Chemical Sciences, Champaign, IL, USA.
Ray C PerkinsNew Liberty Proteomics Corporation, New Liberty, KY, USA. Ray_Perkins@newlibertyproteomics.com.

Funding

Mechanism of Staphylocoagulase-activated Blood ClottingR01HL071544 · NHLBI · VANDERBILT UNIVERSITY MEDICAL CENTER · PI BOCK, PAUL E, VERHAMME, INGRID M · 2003 to 2016
$1.8M
Mechanisms of Glycosaminoglycan-Catalyzed Protease Inactivation by SerpinsR01HL130018 · NHLBI · VANDERBILT UNIVERSITY MEDICAL CENTER · PI VERHAMME, INGRID M · 2016 to 2019
$1.6M
NHLBI NIH HHS R01 HL071544NHLBI NIH HHS R01 HL130018
6 · The paper itself

Abstract

Proteases drive the life cycle of all proteins, ensuring the transportation and activation of newly minted, would-be proteins into their functional form while recycling spent or unneeded proteins. Far from their image as engines of protein digestion, proteases play fundamental roles in basic physiology and regulation at multiple levels of systems biology. Proteases are intimately associated with disease and modulation of proteolytic activity is the presumed target for successful therapeutics. "Proteases: Pivot Points in Functional Proteomics" examines the crucial roles of proteolysis across a wide range of physiological processes and diseases. The existing and potential impacts of proteolysis-related activity on drug and biomarker development are presented in detail. All told the decisive roles of proteases in four major categories comprising 23 separate subcategories are addressed. Within this construct, 15 sets of subject-specific, tabulated data are presented that include identification of proteases, protease inhibitors, substrates, and their actions. Said data are derived from and confirmed by over 300 references. Cross comparison of datasets indicates that proteases, their inhibitors/promoters and substrates intersect over a range of physiological processes and diseases, both chronic and pathogenic. Indeed, "Proteases: Pivot Points …" closes by dramatizing this very point through association of (pro)Thrombin and Fibrin(ogen) with: hemostasis, innate immunity, cardiovascular and metabolic disease, cancer, neurodegeneration, and bacterial self-defense.

Indexed as

ProteomeProteomicsAnimalsComplement System ProteinsDisease SusceptibilityDrug DiscoveryHumansImmunomodulationPeptide HydrolasesProtease InhibitorsProteolysisProteostasisSignal TransductionSubstrate SpecificityComplement System ProteinsPeptide HydrolasesProtease InhibitorsProteomeAutoimmune diseaseBiomarker developmentCancerCardiovascular diseaseCell migrationCell proliferationComplement systemCytosolic proteolysisDigestionDNA processingDNA repairDNA replicationDrug developmentDrug targetEpigeneticsHemostasisImmune regulationInfectious organismsInflammationIntramembrane proteolysisIntranuclear proteolysisMetabolic diseaseNeurodegenerative diseasePeptidasePrecision medicineProgrammed cell deathProteaseProtease inhibitorProtease promoterProtein secretionProteolysisSignalingStrokeTransmembrane proteolysis

Identifiers

PMID30276748
PMCPMC6472488

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.