Evidence map›Paper›PMID 30275445›Full record

ArticleNature communications2018

Analysis of chromatin accessibility uncovers TEAD1 as a regulator of migration in human glioblastoma.

Jessica Tome-Garcia, Parsa Erfani, German Nudelman, Alexander M Tsankov, Igor Katsyv, Rut Tejero, Bin Zhang, Martin Walsh, Roland H Friedel, Elena Zaslavsky and 1 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 66 papers.

0numbers the graph read from it
0cells of the map it votes in
66citing papers in PubMed
4.5field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

66 citing papers in PubMed, 97 citations in OpenAlex.

  1. Article
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  5. The Role of CRISPR and Its Therapeutic Applications in Glioblastoma.International journal of molecular sciences · 2026
    Review
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  20. Cell and gene therapy in neuro-oncology.Handbook of clinical neurology · 2024
    Review

6 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 1 country.

Jessica Tome-GarciaDepartment of Pathology, Icahn School of Medicine at Mount Sinai, New York, NY, 10029, USA.
Parsa ErfaniDepartment of Pathology, Icahn School of Medicine at Mount Sinai, New York, NY, 10029, USA.
German NudelmanDepartment of Neurology, Icahn School of Medicine at Mount Sinai, New York, NY, 10029, USA.
Alexander M TsankovBroad Institute of MIT and Harvard, Cambridge, MA, 02142, USA.
Igor KatsyvDepartment of Genetics and Genomic Sciences and Icahn Institute for Genomics and Multiscale Biology, Icahn School of Medicine at Mount Sinai, New York, NY, 10029, USA.
Rut TejeroDepartment of Neuroscience and The Friedman Brain Institute, Icahn School of Medicine at Mount Sinai, New York, NY, 10029, USA.
Bin ZhangDepartment of Genetics and Genomic Sciences and Icahn Institute for Genomics and Multiscale Biology, Icahn School of Medicine at Mount Sinai, New York, NY, 10029, USA.
Martin WalshDepartment of Pharmacological Sciences, Center for RNA Biology and Medicine, New York, NY, 10029, USA.
Roland H FriedelDepartment of Neuroscience and The Friedman Brain Institute, Icahn School of Medicine at Mount Sinai, New York, NY, 10029, USA.ORCID http://orcid.org/0000-0002-7513-3604
Elena ZaslavskyDepartment of Neurology, Icahn School of Medicine at Mount Sinai, New York, NY, 10029, USA.
Nadejda M TsankovaDepartment of Pathology, Icahn School of Medicine at Mount Sinai, New York, NY, 10029, USA. Nadejda.Tsankova@mssm.edu.
Allen Institute for Brain Science · USIcahn School of Medicine at Mount Sinai · USBroad Institute · US

Funding

Plexin-B2 function in glioma invasion and glioma stem cell maintenanceR01NS092735 · NINDS · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI FRIEDEL, ROLAND HORST · 2016 to 2025
$4.1M
Transforming Genomics with 5 PB Big Omics Data Engine Cray CS300-AC SupercomputerS10OD018522 · OD · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI KOVATCH, PATRICIA · 2014 to 2014
$1.9M
Defining the Chromatin Landscape and Transcriptional Drivers Of Proliferation and Migration In Human Glioblastoma.R03NS104669 · NINDS · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI TSANKOVA, NADEJDA MINCHEVA · 2017 to 2018
$170k
NIH HHS S10 OD018522NINDS NIH HHS R01 NS092735NINDS NIH HHS R03 NS104669U.S. Department of Health & Human Services | National Institutes of Health (NIH) R01NS092735U.S. Department of Health & Human Services | National Institutes of Health (NIH) R03NS104669
6 · The paper itself

Abstract

The intrinsic drivers of migration in glioblastoma (GBM) are poorly understood. To better capture the native molecular imprint of GBM and its developmental context, here we isolate human stem cell populations from GBM (GSC) and germinal matrix tissues and map their chromatin accessibility via ATAC-seq. We uncover two distinct regulatory GSC signatures, a developmentally shared/proliferative and a tumor-specific/migratory one in which TEAD1/4 motifs are uniquely overrepresented. Using ChIP-PCR, we validate TEAD1 trans occupancy at accessibility sites within AQP4, EGFR, and CDH4. To further characterize TEAD's functional role in GBM, we knockout TEAD1 or TEAD4 in patient-derived GBM lines using CRISPR-Cas9. TEAD1 ablation robustly diminishes migration, both in vitro and in vivo, and alters migratory and EMT transcriptome signatures with consistent downregulation of its target AQP4. TEAD1 overexpression restores AQP4 expression, and both TEAD1 and AQP4 overexpression rescue migratory deficits in TEAD1-knockout cells, implicating a direct regulatory role for TEAD1-AQP4 in GBM migration.

Indexed as

Aquaporin 4Cell MovementChromatinChromatin ImmunoprecipitationDNA-Binding ProteinsErbB ReceptorsGene ExpressionGene Expression Regulation, NeoplasticGlioblastomaHumansNeoplasm InvasivenessNeoplastic Stem CellsNuclear ProteinsNucleotide MotifsTEA Domain Transcription FactorsTranscription FactorsAQP4 protein, humanAquaporin 4ChromatinDNA-Binding ProteinsEGFR protein, humanErbB ReceptorsNuclear ProteinsTEAD1 protein, humanTEA Domain Transcription FactorsTranscription Factors

Identifiers

PMID30275445
PMCPMC6167382
OpenAlexW2894279080

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.